Difference between revisions of "Tiso gene 2108"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** protochlorophyllide_re...")
(Created page with "Category:Gene == Gene Tiso_gene_2108 == * right end position: ** 30232 * transcription direction: ** POSITIVE * left end position: ** 27990 * centisome position: ** 92.584...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] ==
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== Gene Tiso_gene_2108 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 30232
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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** protochlorophyllide_reductase
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* left end position:
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* ec number:
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** 27990
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** [http://enzyme.expasy.org/EC/1.3.1.33 EC-1.3.1.33]
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* centisome position:
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** 92.58402   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIVINYL-PROTOCHLOROPHYLLIDE-A]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 3,8-divinyl protochlorophyllide a[c] '''=>''' 1 NADP+[c] '''+''' 1 3,8-divinyl chlorophyllide a[c]
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* Reaction: [[RXN-12579]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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* [[Tiso_gene_17141]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19518]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_10077]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[LIPAS-PWY]]
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* [[PWY-6857]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=30232}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06286 R06286]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=27990}}
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{{#set: common name=ORF}}
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{{#set: centisome position=92.58402    }}
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{{#set: common name=protochlorophyllide_reductase}}
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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{{#set: ec number=EC-1.3.1.33}}
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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{{#set: gene associated=Tiso_gene_17141|Tiso_gene_19518|Tiso_gene_10077}}
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{{#set: in pathway=CHLOROPHYLL-SYN}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:11, 21 March 2018

Gene Tiso_gene_2108

  • right end position:
    • 30232
  • transcription direction:
    • POSITIVE
  • left end position:
    • 27990
  • centisome position:
    • 92.58402
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2108&oldid=40073"