Difference between revisions of "3.2.1.152-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.152-RXN 3.2.1.152-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** endo-_-beta-mannosi...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE--TRNA-LIGASE-RXN GLYCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.152-RXN 3.2.1.152-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glycyl-trna_synthetase
+
** endo-_-beta-mannosidase
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.14 EC-6.1.1.14]
+
** [http://enzyme.expasy.org/EC/3.2.1.152 EC-3.2.1.152]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLY-tRNAs]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-7263]][c] '''=>''' 1 [[CPD-13935]][c] '''+''' 1 [[CPD-7265]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 glycine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAgly[c] '''=>''' 1 diphosphate[c] '''+''' 1 a glycyl-[tRNAgly][c] '''+''' 1 AMP[c]
+
** 1 H2O[c] '''+''' 1 a α-D-mannosyl-(1->6)-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-β-D-glucosaminyl-[glycoprotein][c] '''=>''' 1 α1,6-D mannobiose[c] '''+''' 1 an N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-β-D-glucosaminyl-[glycoprotein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14743]]
+
* Gene: [[Tiso_gene_17158]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_5241]]
−
* [[Tiso_gene_14742]]
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_15472]]
−
* [[Tiso_gene_3788]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16013 16013]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03654 R03654]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P41250 P41250]
 
−
** [http://www.uniprot.org/uniprot/P54380 P54380]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB1 Q9ZCB1]
 
−
** [http://www.uniprot.org/uniprot/P43822 P43822]
 
−
** [http://www.uniprot.org/uniprot/P54381 P54381]
 
−
** [http://www.uniprot.org/uniprot/O51344 O51344]
 
−
** [http://www.uniprot.org/uniprot/Q46371 Q46371]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCB0 Q9ZCB0]
 
−
** [http://www.uniprot.org/uniprot/Q9WY59 Q9WY59]
 
−
** [http://www.uniprot.org/uniprot/P43821 P43821]
 
−
** [http://www.uniprot.org/uniprot/O83678 O83678]
 
−
** [http://www.uniprot.org/uniprot/Q9WY60 Q9WY60]
 
−
** [http://www.uniprot.org/uniprot/Q9PPK3 Q9PPK3]
 
−
** [http://www.uniprot.org/uniprot/P56454 P56454]
 
−
** [http://www.uniprot.org/uniprot/Q9PN63 Q9PN63]
 
−
** [http://www.uniprot.org/uniprot/Q57681 Q57681]
 
−
** [http://www.uniprot.org/uniprot/P67029 P67029]
 
−
** [http://www.uniprot.org/uniprot/O67081 O67081]
 
−
** [http://www.uniprot.org/uniprot/O67898 O67898]
 
−
** [http://www.uniprot.org/uniprot/O59235 O59235]
 
−
** [http://www.uniprot.org/uniprot/P47493 P47493]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKP1 Q9ZKP1]
 
−
** [http://www.uniprot.org/uniprot/Q9JW67 Q9JW67]
 
−
** [http://www.uniprot.org/uniprot/P56453 P56453]
 
−
** [http://www.uniprot.org/uniprot/O27874 O27874]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKM9 Q9ZKM9]
 
−
** [http://www.uniprot.org/uniprot/Q9CGK0 Q9CGK0]
 
−
** [http://www.uniprot.org/uniprot/P38088 P38088]
 
−
** [http://www.uniprot.org/uniprot/Q06817 Q06817]
 
−
** [http://www.uniprot.org/uniprot/Q51114 Q51114]
 
−
** [http://www.uniprot.org/uniprot/P75425 P75425]
 
−
** [http://www.uniprot.org/uniprot/Q55716 Q55716]
 
−
** [http://www.uniprot.org/uniprot/P00960 P00960]
 
−
** [http://www.uniprot.org/uniprot/P00961 P00961]
 
−
** [http://www.uniprot.org/uniprot/Q8L785 Q8L785]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glycyl-trna_synthetase}}
+
{{#set: common name=endo-_-beta-mannosidase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-3.2.1.152}}
−
{{#set: ec number=EC-6.1.1.14}}
+
{{#set: gene associated=Tiso_gene_17158|Tiso_gene_5241|Tiso_gene_15472}}
−
{{#set: gene associated=Tiso_gene_14743|Tiso_gene_14742|Tiso_gene_3788}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:11, 21 March 2018

Reaction 3.2.1.152-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • endo-_-beta-mannosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 a α-D-mannosyl-(1->6)-β-D-mannosyl-(1->4)-N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-β-D-glucosaminyl-[glycoprotein][c] => 1 α1,6-D mannobiose[c] + 1 an N-acetyl-β-D-glucosaminyl-(1->4)-N-acetyl-β-D-glucosaminyl-[glycoprotein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.2.1.152-RXN&oldid=40085"