Difference between revisions of "PWY-5080"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINE--TRNA-LIGASE-RXN GLUTAMINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5080 PWY-5080] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINE--TRNA-LIGASE-RXN GLUTAMINE--TRNA-LIGASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5080 PWY-5080] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** glutamyl_or_glutaminyl_trna_synthetase
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** very long chain fatty acid biosynthesis I
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** glutamine--trna_ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.18 EC-6.1.1.18]
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* Synonym(s):
 
* Synonym(s):
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** VLCFAs biosynthesis I
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''4''' reactions in the full pathway
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** 1 [[GLN-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-11750]]
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* With common name(s):
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** 0 associated gene:
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** 1 a tRNAgln[c] '''+''' 1 ATP[c] '''+''' 1 L-glutamine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-glutaminyl-[tRNAgln][c] '''+''' 1 AMP[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-7697]]
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* [[Tiso_gene_5915]]
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** 0 associated gene:
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** IN-SILICO_ANNOTATION
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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* [[RXN-7698]]
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* [[Tiso_gene_11124]]
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** 1 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_9871]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-7711]]
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* [[Tiso_gene_7596]]
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** 0 associated gene:
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** [[pantograph]]-[[esiliculosus]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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*** [[annotation-in-silico_annotation]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reaction(s) not found ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20121 20121]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5080 PWY-5080]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03652 R03652]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: common name=very long chain fatty acid biosynthesis I}}
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** [http://www.uniprot.org/uniprot/O59314 O59314]
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{{#set: common name=VLCFAs biosynthesis I}}
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** [http://www.uniprot.org/uniprot/P43831 P43831]
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/P47897 P47897]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/P14325 P14325]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P95968 P95968]
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** [http://www.uniprot.org/uniprot/P13188 P13188]
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** [http://www.uniprot.org/uniprot/P00962 P00962]
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** [http://www.uniprot.org/uniprot/P52780 P52780]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutamyl_or_glutaminyl_trna_synthetase}}
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{{#set: common name=glutamine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.18}}
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{{#set: gene associated=Tiso_gene_5915|Tiso_gene_11124|Tiso_gene_7596}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:12, 21 March 2018

Pathway PWY-5080

  • taxonomic range:
  • common name:
    • very long chain fatty acid biosynthesis I
  • Synonym(s):
    • VLCFAs biosynthesis I

Reaction(s) found

4 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5080&oldid=40096"