|
|
| (One intermediate revision by the same user not shown) |
| Line 1: |
Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] == | + | == Gene Tiso_gene_7173 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 11222 |
| − | * ec number: | + | * transcription direction: |
| − | ** [http://enzyme.expasy.org/EC/6.3.4.3 EC-6.3.4.3] | + | ** POSITIVE |
| | + | * left end position: |
| | + | ** 9938 |
| | + | * centisome position: |
| | + | ** 86.92382 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[MRNA-GUANYLYLTRANSFERASE-RXN]] |
| − | ** 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[THF-GLU-N]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 ATP[c] '''+''' 1 formate[c] '''+''' 1 a tetrahydrofolate[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an N10-formyl-tetrahydrofolate[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_432]] | + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_7582]]
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
| + | |
| − | ** '''7''' reactions found over '''12''' reactions in the full pathway
| + | |
| − | * [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
| + | |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | * [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
| + | |
| − | ** '''9''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
| + | |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
| + | |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | + | * [[PWY-7375]] |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=11222}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20221 20221]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=9938}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
| + | {{#set: centisome position=86.92382 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=MRNA-GUANYLYLTRANSFERASE-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/P09440 P09440]
| + | {{#set: pathway associated=PWY-7375}} |
| − | ** [http://www.uniprot.org/uniprot/P13419 P13419]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P07245 P07245]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P11586 P11586]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P21164 P21164]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P28723 P28723]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q07064 Q07064]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q27772 Q27772]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: ec number=EC-6.3.4.3}} | + | |
| − | {{#set: gene associated=Tiso_gene_432|Tiso_gene_7582}} | + | |
| − | {{#set: in pathway=PWY-2201|PWY-1722|PWY-3841|CODH-PWY|PWY-2161}} | + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}} | + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | |
