Difference between revisions of "Tiso gene 19083"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.20-RXN 1.5.1.20-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** methylenetetrahydrofo...")
(Created page with "Category:Gene == Gene Tiso_gene_19083 == * right end position: ** 2537 * transcription direction: ** POSITIVE * left end position: ** 656 * centisome position: ** 25.27938...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.20-RXN 1.5.1.20-RXN] ==
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== Gene Tiso_gene_19083 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2537
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* common name:
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* transcription direction:
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** methylenetetrahydrofolate_reductase
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** POSITIVE
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** -methylenetetrahydrofolate_reductase
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* left end position:
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* ec number:
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** 656
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** [http://enzyme.expasy.org/EC/1.5.1.20 EC-1.5.1.20]
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* centisome position:
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** 25.279385   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.1.3.67-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[5-METHYL-THF-GLU-N]][c]
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** Source: [[orthology-athaliana]]
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* With common name(s):
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** 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''=>''' 1 NAD+[c] '''+''' 1 an N5-methyl-tetrahydrofolate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14582]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16954]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-6368]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=2537}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: left end position=656}}
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** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93]
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{{#set: centisome position=25.279385    }}
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** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7]
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{{#set: reaction associated=3.1.3.67-RXN|PROTEIN-TYROSINE-PHOSPHATASE-RXN}}
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** [http://www.uniprot.org/uniprot/P45208 P45208]
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{{#set: pathway associated=PWY-6368}}
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** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1]
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** [http://www.uniprot.org/uniprot/P11003 P11003]
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** [http://www.uniprot.org/uniprot/P46151 P46151]
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** [http://www.uniprot.org/uniprot/P53128 P53128]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methylenetetrahydrofolate_reductase}}
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{{#set: common name=-methylenetetrahydrofolate_reductase}}
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{{#set: ec number=EC-1.5.1.20}}
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{{#set: gene associated=Tiso_gene_14582|Tiso_gene_16954}}
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{{#set: in pathway=PWY-2201|1CMET2-PWY|PWY-3841|CODH-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:12, 21 March 2018

Gene Tiso_gene_19083

  • right end position:
    • 2537
  • transcription direction:
    • POSITIVE
  • left end position:
    • 656
  • centisome position:
    • 25.279385
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19083&oldid=40164"