Difference between revisions of "PWY-6823"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** at1g17160 ** rib...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6823 PWY-6823] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6823 PWY-6823] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
−
** ORF
+
** molybdenum cofactor biosynthesis
−
** at1g17160
+
−
** ribokinase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.1.15 EC-2.7.1.15]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** moco biosynthesis
 +
** molybdopterin biosynthesis
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''8''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-15318]][c]
+
* [[RXN-8340]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 ATP[c] '''+''' 1 α-D-ribofuranose[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 α-D-ribose 5-phosphate[c]
+
*** [[Tiso_gene_7986]]
−
 
+
** 1 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[orthology-esiliculosus]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN-8348]]
−
* [[Tiso_gene_17974]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_17329]]
−
* [[Tiso_gene_911]]
+
** 1 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* [[RXN0-308]]
−
* [[Tiso_gene_18204]]
+
** 3 associated gene(s):
−
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_4284]]
−
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_11478]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_14710]]
−
* [[Tiso_gene_82]]
+
** 3 reconstruction source(s) associated:
−
** IN-SILICO_ANNOTATION
+
*** [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_81]]
+
*** [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
== Reaction(s) not found ==
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11361 RXN-11361]
−
* [[Tiso_gene_7682]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12473 RXN-12473]
−
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-17809 RXN-17809]
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8342 RXN-8342]
−
** EXPERIMENTAL_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8344 RXN-8344]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[RIBOKIN-PWY]], ribose degradation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13697 13697]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6823 PWY-6823]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
+
{{#set: taxonomic range=TAX-2}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2759}}
−
** [http://www.uniprot.org/uniprot/P44331 P44331]
+
{{#set: common name=molybdenum cofactor biosynthesis}}
−
** [http://www.uniprot.org/uniprot/P36945 P36945]
+
{{#set: common name=moco biosynthesis|molybdopterin biosynthesis}}
−
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
+
{{#set: reaction found=3}}
−
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
+
{{#set: total reaction=8}}
−
** [http://www.uniprot.org/uniprot/P25332 P25332]
+
{{#set: completion rate=38.0}}
−
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
+
−
** [http://www.uniprot.org/uniprot/O93727 O93727]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=at1g17160}}
+
−
{{#set: common name=ribokinase}}
+
−
{{#set: ec number=EC-2.7.1.15}}
+
−
{{#set: gene associated=Tiso_gene_17974|Tiso_gene_911|Tiso_gene_18204|Tiso_gene_82|Tiso_gene_81|Tiso_gene_7682}}
+
−
{{#set: in pathway=RIBOKIN-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:13, 21 March 2018

Pathway PWY-6823

  • taxonomic range:
  • common name:
    • molybdenum cofactor biosynthesis
  • Synonym(s):
    • moco biosynthesis
    • molybdopterin biosynthesis

Reaction(s) found

3 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6823&oldid=40303"