Difference between revisions of "1.8.3.5-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYL-KIN-RXN GUANYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phospho...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.3.5-RXN 1.8.3.5-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANYL-KIN-RXN GUANYL-KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.3.5-RXN 1.8.3.5-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** thymidine_phosphorylase
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.8 EC-2.7.4.8]
+
** [http://enzyme.expasy.org/EC/1.8.3.5 EC-1.8.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GMP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[S-PRENYL-L-CYSTEINE]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[PRENAL]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 GMP[c] '''+''' 1 ATP[c] '''=>''' 1 GDP[c] '''+''' 1 ADP[c]
+
** 1 S-prenyl-L-cysteine[c] '''+''' 1 H2O[c] '''+''' 1 oxygen[c] '''=>''' 1 L-cysteine[c] '''+''' 1 3-methyl-2-butenal[c] '''+''' 1 hydrogen peroxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12554]]
+
* Gene: [[Tiso_gene_17144]]
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_1011]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4560]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_15049]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7221]], guanosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7221 PWY-7221]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20780 20780]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00332 R00332]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07360 R07360]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9PNB8 Q9PNB8]
+
−
** [http://www.uniprot.org/uniprot/Q9CEE3 Q9CEE3]
+
−
** [http://www.uniprot.org/uniprot/Q9JT96 Q9JT96]
+
−
** [http://www.uniprot.org/uniprot/P44310 P44310]
+
−
** [http://www.uniprot.org/uniprot/P15454 P15454]
+
−
** [http://www.uniprot.org/uniprot/P60546 P60546]
+
−
** [http://www.uniprot.org/uniprot/P31006 P31006]
+
−
** [http://www.uniprot.org/uniprot/P46195 P46195]
+
−
** [http://www.uniprot.org/uniprot/Q16774 Q16774]
+
−
** [http://www.uniprot.org/uniprot/P72648 P72648]
+
−
** [http://www.uniprot.org/uniprot/Q6RHR9 Q6RHR9]
+
−
** [http://www.uniprot.org/uniprot/Q9M681 Q9M681]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=thymidine_phosphorylase}}
+
{{#set: ec number=EC-1.8.3.5}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_17144}}
−
{{#set: ec number=EC-2.7.4.8}}
+
{{#set: in pathway=}}
−
{{#set: gene associated=Tiso_gene_12554|Tiso_gene_1011|Tiso_gene_4560|Tiso_gene_15049}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY-7221}}
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana|orthology-esiliculosus|orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:14, 21 March 2018

Reaction 1.8.3.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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