Difference between revisions of "Tiso gene 15498"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF **...")
(Created page with "Category:Gene == Gene Tiso_gene_15498 == * right end position: ** 2829 * transcription direction: ** POSITIVE * left end position: ** 983 * centisome position: ** 19.67968...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9623 RXN-9623] ==
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== Gene Tiso_gene_15498 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2829
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** ORF
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* left end position:
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** long_chain_acyl-_synthetase
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** 983
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** acyl-_synthetase
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* centisome position:
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* ec number:
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** 19.67968   
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4-NITROPHENYLPHOSPHATASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PALMITYL-COA]][c] '''+''' 1 [[AMP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 palmitate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 palmitoyl-CoA[c] '''+''' 1 AMP[c]
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* Reaction: [[GPH-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_12275]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-5972]], stearate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5972 PWY-5972]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-181]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2829}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30754 30754]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=983}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01280 R01280]
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{{#set: centisome position=19.67968    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=4-NITROPHENYLPHOSPHATASE-RXN|GPH-RXN}}
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{{#set: common name=polyketide_synthase}}
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{{#set: pathway associated=PWY-181}}
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{{#set: common name=ORF}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_13394|Tiso_gene_12275|Tiso_gene_10876|Tiso_gene_4191|Tiso_gene_9394|Tiso_gene_136|Tiso_gene_135|Tiso_gene_500|Tiso_gene_7855|Tiso_gene_348}}
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{{#set: in pathway=PWY-5972|PWY-5971}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:14, 21 March 2018

Gene Tiso_gene_15498

  • right end position:
    • 2829
  • transcription direction:
    • POSITIVE
  • left end position:
    • 983
  • centisome position:
    • 19.67968
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15498&oldid=40365"