Difference between revisions of "Tiso gene 11163"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylformylgly...")
(Created page with "Category:Gene == Gene Tiso_gene_11163 == * right end position: ** 2110 * transcription direction: ** POSITIVE * left end position: ** 541 * centisome position: ** 6.776901...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
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== Gene Tiso_gene_11163 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2110
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* common name:
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* transcription direction:
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** phosphoribosylformylglycinamidine_synthase-like
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.3.5.3 EC-6.3.5.3]
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** 541
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* centisome position:
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** 6.776901   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[OROPRIBTRANS-RXN]]
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** 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 L-glutamate[c] '''+''' 1 2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5865]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7790]]
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* [[PWY-7791]]
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* [[PWY-5686]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2110}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=541}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
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{{#set: centisome position=6.776901    }}
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* UNIPROT:
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{{#set: reaction associated=OROPRIBTRANS-RXN}}
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** [http://www.uniprot.org/uniprot/O67691 O67691]
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{{#set: pathway associated=PWY-7790|PWY-7791|PWY-5686}}
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** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
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** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
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** [http://www.uniprot.org/uniprot/O28339 O28339]
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** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
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** [http://www.uniprot.org/uniprot/O26270 O26270]
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** [http://www.uniprot.org/uniprot/Q59042 Q59042]
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** [http://www.uniprot.org/uniprot/Q58660 Q58660]
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** [http://www.uniprot.org/uniprot/O27427 O27427]
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** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
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** [http://www.uniprot.org/uniprot/P35852 P35852]
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** [http://www.uniprot.org/uniprot/P38972 P38972]
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** [http://www.uniprot.org/uniprot/Q55843 Q55843]
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** [http://www.uniprot.org/uniprot/Q55037 Q55037]
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** [http://www.uniprot.org/uniprot/P12041 P12041]
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** [http://www.uniprot.org/uniprot/P12042 P12042]
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** [http://www.uniprot.org/uniprot/P15254 P15254]
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** [http://www.uniprot.org/uniprot/O14228 O14228]
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** [http://www.uniprot.org/uniprot/P35421 P35421]
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** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
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** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylformylglycinamidine_synthase-like}}
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{{#set: ec number=EC-6.3.5.3}}
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{{#set: gene associated=Tiso_gene_5865}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-athaliana}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:15, 21 March 2018

Gene Tiso_gene_11163

  • right end position:
    • 2110
  • transcription direction:
    • POSITIVE
  • left end position:
    • 541
  • centisome position:
    • 6.776901
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11163&oldid=40420"