Difference between revisions of "FGAMSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAMPH DAMPH] == * direction: ** REVERSIBLE * common name: ** 2'-Deoxyadenosine 5'-monophosphate pho...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylformylgly...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAMPH DAMPH] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 2'-Deoxyadenosine 5'-monophosphate phosphohydrolase
+
** phosphoribosylformylglycinamidine_synthase-like
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.3.5.3 EC-6.3.5.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[DAMP]][c] '''+''' 1.0 [[WATER]][c] '''<=>''' 1.0 [[DEOXYADENOSINE]][c] '''+''' 1.0 [[Pi]][c]
+
** 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 dAMP[c] '''+''' 1.0 H2O[c] '''<=>''' 1.0 2'-deoxyadenosine[c] '''+''' 1.0 phosphate[c]
+
** 1 N2-formyl-N1-(5-phospho-&beta;-D-ribosyl)glycinamide[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 2-(formamido)-N1-(5-phospho-&beta;-D-ribosyl)acetamidine[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6988]]
+
* Gene: [[Tiso_gene_5865]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_9166]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=2'-Deoxyadenosine 5'-monophosphate phosphohydrolase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
−
{{#set: gene associated=Tiso_gene_6988|Tiso_gene_9166}}
+
* LIGAND-RXN:
−
{{#set: in pathway=}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
−
{{#set: reconstruction category=orthology}}
+
* UNIPROT:
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
** [http://www.uniprot.org/uniprot/O67691 O67691]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
 +
** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
 +
** [http://www.uniprot.org/uniprot/O28339 O28339]
 +
** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
 +
** [http://www.uniprot.org/uniprot/O26270 O26270]
 +
** [http://www.uniprot.org/uniprot/Q59042 Q59042]
 +
** [http://www.uniprot.org/uniprot/Q58660 Q58660]
 +
** [http://www.uniprot.org/uniprot/O27427 O27427]
 +
** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
 +
** [http://www.uniprot.org/uniprot/P35852 P35852]
 +
** [http://www.uniprot.org/uniprot/P38972 P38972]
 +
** [http://www.uniprot.org/uniprot/Q55843 Q55843]
 +
** [http://www.uniprot.org/uniprot/Q55037 Q55037]
 +
** [http://www.uniprot.org/uniprot/P12041 P12041]
 +
** [http://www.uniprot.org/uniprot/P12042 P12042]
 +
** [http://www.uniprot.org/uniprot/P15254 P15254]
 +
** [http://www.uniprot.org/uniprot/O14228 O14228]
 +
** [http://www.uniprot.org/uniprot/P35421 P35421]
 +
** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
 +
** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=phosphoribosylformylglycinamidine_synthase-like}}
 +
{{#set: ec number=EC-6.3.5.3}}
 +
{{#set: gene associated=Tiso_gene_5865}}
 +
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction FGAMSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylformylglycinamidine_synthase-like
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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