Difference between revisions of "RXN-17919"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17919 RXN-17919] == * direction: ** LEFT-TO-RIGHT * common name: ** dna_ligase_mrna_capping_enz...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17919 RXN-17919] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
** thiamine diphosphate biosynthesis I (E. coli)
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** dna_ligase_mrna_capping_enzyme
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** dna_ligase
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** ORF
 
* Synonym(s):
 
* Synonym(s):
** vitamin B1 biosynthesis
 
** thiamin diphosphate biosynthesis I (E. coli)
 
  
== Reaction(s) found ==
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== Reaction Formula ==
'''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
* [[RXN-12611]]
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** 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c]
** 3 associated gene(s):
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* With common name(s):
*** [[Tiso_gene_10320]]
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** 1 a [DNA]-3'-hydroxyl[c] '''+''' 1 a 5'-(5'-diphosphoadenosine)-[DNA][c] '''=>''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 DNAn[c]
*** [[Tiso_gene_2160]]
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*** [[Tiso_gene_2159]]
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== Genes associated with this reaction  ==
** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_11251]]
== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
* [http://metacyc.org/META/NEW-IMAGE?object=THI-P-KIN-RXN THI-P-KIN-RXN]
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*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14249]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14250]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_3498]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_12142]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6743]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6894 PWY-6894]
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{{#set: common name=dna_ligase_mrna_capping_enzyme}}
{{#set: taxonomic range=TAX-2}}
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{{#set: common name=dna_ligase}}
{{#set: common name=thiamine diphosphate biosynthesis I (E. coli)}}
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{{#set: common name=ORF}}
{{#set: common name=vitamin B1 biosynthesis|thiamin diphosphate biosynthesis I (E. coli)}}
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{{#set: gene associated=Tiso_gene_11251|Tiso_gene_14249|Tiso_gene_14250|Tiso_gene_3498|Tiso_gene_12142|Tiso_gene_6743}}
{{#set: reaction found=1}}
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{{#set: in pathway=}}
{{#set: total reaction=2}}
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{{#set: reconstruction category=annotation}}
{{#set: completion rate=50.0}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction RXN-17919

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dna_ligase_mrna_capping_enzyme
    • dna_ligase
    • ORF
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links