Difference between revisions of "PYRUVATE-CARBOXYLASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http:/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATE-CARBOXYLASE-RXN PYRUVATE-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-I-RXN GTP-CYCLOHYDRO-I-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATE-CARBOXYLASE-RXN PYRUVATE-CARBOXYLASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ORF
 +
** Pyruvate carboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.4.16 EC-3.5.4.16]
+
** [http://enzyme.expasy.org/EC/6.4.1.1 EC-6.4.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[DIHYDRONEOPTERIN-P3]][c]
+
** 1 [[PYRUVATE]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 H+[c] '''+''' 1 formate[c] '''+''' 1 7,8-dihydroneopterin 3'-triphosphate[c]
+
** 1 pyruvate[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 oxaloacetate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12736]]
+
* Gene: [[Tiso_gene_15144]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_15145]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_2812]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5663]], tetrahydrobiopterin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5663 PWY-5663]
+
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-6983]], tetrahydrobiopterin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6983 PWY-6983]
+
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY0-1433]], tetrahydromonapterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1433 PWY0-1433]
+
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7442 PWY-7442]
+
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5664]], tetrahydrobiopterin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5664 PWY-5664]
+
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6703]], preQ0 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6703 PWY-6703]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6147 PWY-6147]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20844 20844]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00344 R00344]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19465 P19465]
+
** [http://www.uniprot.org/uniprot/Q05920 Q05920]
−
** [http://www.uniprot.org/uniprot/P22288 P22288]
+
** [http://www.uniprot.org/uniprot/Q9PNQ4 Q9PNQ4]
−
** [http://www.uniprot.org/uniprot/P43866 P43866]
+
** [http://www.uniprot.org/uniprot/P95127 P95127]
−
** [http://www.uniprot.org/uniprot/P51594 P51594]
+
** [http://www.uniprot.org/uniprot/Q9PP00 Q9PP00]
−
** [http://www.uniprot.org/uniprot/P64207 P64207]
+
** [http://www.uniprot.org/uniprot/Q9CHQ7 Q9CHQ7]
−
** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
+
** [http://www.uniprot.org/uniprot/Q9KWU4 Q9KWU4]
−
** [http://www.uniprot.org/uniprot/O66603 O66603]
+
** [http://www.uniprot.org/uniprot/P11498 P11498]
−
** [http://www.uniprot.org/uniprot/P56462 P56462]
+
** [http://www.uniprot.org/uniprot/P52873 P52873]
−
** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
+
** [http://www.uniprot.org/uniprot/P11154 P11154]
−
** [http://www.uniprot.org/uniprot/P50141 P50141]
+
** [http://www.uniprot.org/uniprot/P32327 P32327]
−
** [http://www.uniprot.org/uniprot/P30793 P30793]
+
** [http://www.uniprot.org/uniprot/O17732 O17732]
−
** [http://www.uniprot.org/uniprot/P51601 P51601]
+
** [http://www.uniprot.org/uniprot/Q9UUE1 Q9UUE1]
−
** [http://www.uniprot.org/uniprot/Q05915 Q05915]
+
** [http://www.uniprot.org/uniprot/Q16921 Q16921]
−
** [http://www.uniprot.org/uniprot/P51597 P51597]
+
** [http://www.uniprot.org/uniprot/Q9XBJ1 Q9XBJ1]
−
** [http://www.uniprot.org/uniprot/P51600 P51600]
+
−
** [http://www.uniprot.org/uniprot/Q94465 Q94465]
+
−
** [http://www.uniprot.org/uniprot/Q55759 Q55759]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-3.5.4.16}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_12736}}
+
{{#set: common name=Pyruvate carboxylase}}
−
{{#set: in pathway=PWY-5663|PWY-6983|PWY0-1433|PWY-7442|PWY-5664|PWY-6703|PWY-6147}}
+
{{#set: ec number=EC-6.4.1.1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_15144|Tiso_gene_15145|Tiso_gene_2812}}
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: in pathway=PWY-6142|PWY-6146|P42-PWY|PWY-5750|PWY66-399}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:15, 21 March 2018

Reaction PYRUVATE-CARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • Pyruvate carboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyruvate[c] + 1 hydrogencarbonate[c] + 1 ATP[c] => 1 phosphate[c] + 1 oxaloacetate[c] + 1 ADP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism: PWY-6146
    • 7 reactions found over 16 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis: PWY-5750
    • 3 reactions found over 4 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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