Difference between revisions of "Tiso gene 11334"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydratase **...")
(Created page with "Category:Gene == Gene Tiso_gene_11334 == * right end position: ** 7636 * transcription direction: ** NEGATIVE * left end position: ** 48 * centisome position: ** 0.6102212...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8991 RXN-8991] ==
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== Gene Tiso_gene_11334 ==
* direction:
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* right end position:
** REVERSIBLE
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** 7636
* common name:
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* transcription direction:
** 3-isopropylmalate dehydratase
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** NEGATIVE
** ORF
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* left end position:
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** 48
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* centisome position:
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** 0.6102212   
 
* Synonym(s):
 
* Synonym(s):
** (2R,3S)-3-isopropylmalate hydro-lyase
 
** β-isopropylmalate dehydratase
 
** α-isopropylmalate isomerase
 
** 3-isopropylmalate hydro-lyase
 
  
== Reaction Formula ==
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== Reactions associated ==
* With identifiers:
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* Reaction: [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-9451]][c]
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** Source: [[annotation-in-silico_annotation]]
* With common name(s):
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*** Assignment: ec-number
** 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 H2O[c] '''+''' 1 2-isopropylmaleate[c]
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* Reaction: [[POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN]]
 
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_12778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: right end position=7636}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
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{{#set: transcription direction=NEGATIVE}}
* LIGAND-RXN:
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{{#set: left end position=48}}
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
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{{#set: centisome position=0.6102212    }}
{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=DNA-DIRECTED-DNA-POLYMERASE-RXN|POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN}}
{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=ORF}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Tiso_gene_12778}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:16, 21 March 2018

Gene Tiso_gene_11334

  • right end position:
    • 7636
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 48
  • centisome position:
    • 0.6102212
  • Synonym(s):

Reactions associated

Pathways associated

External links