Difference between revisions of "Tiso gene 1948"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Gene == Gene Tiso_gene_1948 == * right end position: ** 18684 * transcription direction: ** POSITIVE * left end position: ** 13948 * centisome position: ** 61.436...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-RXN ACETATE--COA-LIGASE-RXN] ==
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== Gene Tiso_gene_1948 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 18684
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* common name:
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* transcription direction:
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** acetyl-coenzyme_a_synthetase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.2.1.1 EC-6.2.1.1]
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** 13948
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* centisome position:
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** 61.436813   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[14-LACTONASE-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 acetate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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* Reaction: [[GALACTONOLACTONASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[GLUCONOLACT-RXN]]
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* [[Tiso_gene_1612]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-8783]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3617]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_3616]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY66-161]], ethanol degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-161 PWY66-161]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-162]], ethanol degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-162 PWY66-162]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY0-1313]], acetate conversion to acetyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1313 PWY0-1313]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-2221]]
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* [[PWY-7165]]
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* [[NPGLUCAT-PWY]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY3DJ-35471]]
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* [[GALDEG-PWY]]
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* [[PWY-5530]]
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* [[DHGLUCONATE-PYR-CAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=18684}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=13948}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
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{{#set: centisome position=61.436813    }}
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* UNIPROT:
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{{#set: reaction associated=14-LACTONASE-RXN|GALACTONOLACTONASE-RXN|GLUCONOLACT-RXN|RXN-8783}}
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** [http://www.uniprot.org/uniprot/P27095 P27095]
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{{#set: pathway associated=PWY-2221|PWY-7165|NPGLUCAT-PWY|GLUCOSE1PMETAB-PWY|PWY3DJ-35471|GALDEG-PWY|PWY-5530|DHGLUCONATE-PYR-CAT-PWY}}
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** [http://www.uniprot.org/uniprot/P31638 P31638]
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** [http://www.uniprot.org/uniprot/Q12662 Q12662]
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** [http://www.uniprot.org/uniprot/P28812 P28812]
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** [http://www.uniprot.org/uniprot/P27550 P27550]
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** [http://www.uniprot.org/uniprot/O34613 O34613]
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** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
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** [http://www.uniprot.org/uniprot/P36333 P36333]
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** [http://www.uniprot.org/uniprot/Q01574 Q01574]
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** [http://www.uniprot.org/uniprot/P39062 P39062]
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** [http://www.uniprot.org/uniprot/Q01576 Q01576]
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** [http://www.uniprot.org/uniprot/P52910 P52910]
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** [http://www.uniprot.org/uniprot/Q55404 Q55404]
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** [http://www.uniprot.org/uniprot/P16928 P16928]
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** [http://www.uniprot.org/uniprot/P16929 P16929]
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** [http://www.uniprot.org/uniprot/O68040 O68040]
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** [http://www.uniprot.org/uniprot/P78773 P78773]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=acetyl-coenzyme_a_synthetase}}
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{{#set: ec number=EC-6.2.1.1}}
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{{#set: gene associated=Tiso_gene_1612|Tiso_gene_3617|Tiso_gene_3616}}
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{{#set: in pathway=PWY66-161|PWY66-21|PWY66-162|PWY0-1313|PWY-6672|PWY-7118}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:18, 21 March 2018

Gene Tiso_gene_1948

  • right end position:
    • 18684
  • transcription direction:
    • POSITIVE
  • left end position:
    • 13948
  • centisome position:
    • 61.436813
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1948&oldid=40810"