Difference between revisions of "1.8.4.12-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.4.12-RXN 1.8.4.12-RXN] == * direction: ** REVERSIBLE * common name: ** peptide_methionine-r-sul...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTOCHROME-C-PEROXIDASE-RXN CYTOCHROME-C-PEROXIDASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.8.4.12-RXN 1.8.4.12-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** ascorbate_peroxidase
+
** peptide_methionine-r-sulfoxide_reductase
−
** cytochrome-c_peroxidase
+
−
** peroxidase
+
 
** ORF
 
** ORF
 +
** methionine_sulfoxide_reductase_with_associated_domain
 +
** methionine_sulfoxide_reductase_b
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.11.1.5 EC-1.11.1.5]
+
** [http://enzyme.expasy.org/EC/1.8.4.12 EC-1.8.4.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[Cytochromes-C-Reduced]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[WATER]][c] '''+''' 2 [[Cytochromes-C-Oxidized]][c]
+
** 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[Protein-L-methionine]][c] '''<=>''' 1 [[Red-Thioredoxin]][c] '''+''' 1 [[Protein-L-methionine-R-S-oxides]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 a reduced c-type cytochrome[c] '''+''' 1 hydrogen peroxide[c] '''+''' 2 H+[c] '''=>''' 2 H2O[c] '''+''' 2 an oxidized c-type cytochrome[c]
+
** 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c] '''+''' 1 a [protein]-L-methionine[c] '''<=>''' 1 a reduced thioredoxin[c] '''+''' 1 a protein-L-methionine-(R)-S-oxide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5435]]
+
* Gene: [[Tiso_gene_18058]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_19578]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_19683]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_16975]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14455]]
−
* [[Tiso_gene_11606]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_6049]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_11607]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4990]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4992]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-primary_network]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24164 24164]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00017 R00017]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07607 R07607]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P55929 P55929]
+
{{#set: common name=peptide_methionine-r-sulfoxide_reductase}}
−
** [http://www.uniprot.org/uniprot/O66533 O66533]
+
−
** [http://www.uniprot.org/uniprot/Q9RYL1 Q9RYL1]
+
−
** [http://www.uniprot.org/uniprot/Q9KVQ2 Q9KVQ2]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJF8 Q9ZJF8]
+
−
** [http://www.uniprot.org/uniprot/O25997 O25997]
+
−
** [http://www.uniprot.org/uniprot/Q9PIE3 Q9PIE3]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ91 Q9PJ91]
+
−
** [http://www.uniprot.org/uniprot/Q8X5N0 Q8X5N0]
+
−
** [http://www.uniprot.org/uniprot/P14532 P14532]
+
−
** [http://www.uniprot.org/uniprot/P00431 P00431]
+
−
** [http://www.uniprot.org/uniprot/P37197 P37197]
+
−
** [http://www.uniprot.org/uniprot/Q51658 Q51658]
+
−
** [http://www.uniprot.org/uniprot/Q50233 Q50233]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ascorbate_peroxidase}}
+
−
{{#set: common name=cytochrome-c_peroxidase}}
+
−
{{#set: common name=peroxidase}}
+
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.11.1.5}}
+
{{#set: common name=methionine_sulfoxide_reductase_with_associated_domain}}
−
{{#set: gene associated=Tiso_gene_5435|Tiso_gene_19683|Tiso_gene_11606|Tiso_gene_11607|Tiso_gene_4990|Tiso_gene_4992}}
+
{{#set: common name=methionine_sulfoxide_reductase_b}}
 +
{{#set: ec number=EC-1.8.4.12}}
 +
{{#set: gene associated=Tiso_gene_18058|Tiso_gene_19578|Tiso_gene_16975|Tiso_gene_14455|Tiso_gene_6049}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
−
{{#set: reconstruction category=manual|annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:19, 21 March 2018

Reaction 1.8.4.12-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • peptide_methionine-r-sulfoxide_reductase
    • ORF
    • methionine_sulfoxide_reductase_with_associated_domain
    • methionine_sulfoxide_reductase_b
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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