Difference between revisions of "IPPISOM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] == * direction: ** REVERSIBLE * common name: ** isopentenyl-diphosphate_de...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8999 RXN-8999] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IPPISOM-RXN IPPISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** isopentenyl-diphosphate_delta-isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.31 EC-2.5.1.31]
+
** [http://enzyme.expasy.org/EC/5.3.3.2 EC-5.3.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 8 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 8 [[PPI]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
 
* With common name(s):
 
* With common name(s):
−
** 8 isopentenyl diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c] '''=>''' 8 diphosphate[c] '''+''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c]
+
** 1 isopentenyl diphosphate[c] '''<=>''' 1 dimethylallyl diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8531]]
+
* Gene: [[Tiso_gene_8653]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
+
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6383 PWY-6383]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[manual-primary_network]]
−
*** Tool: [[pantograph]]
+
* Category: [[annotation]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27551 27551]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23284 23284]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06447 R06447]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
−
** [http://www.genome.jp/dbget-bin/www_bget?R07269 R07269]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O82827 O82827]
+
** [http://www.uniprot.org/uniprot/P15496 P15496]
−
** [http://www.uniprot.org/uniprot/O43091 O43091]
+
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
−
** [http://www.uniprot.org/uniprot/Q9JX35 Q9JX35]
+
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
−
** [http://www.uniprot.org/uniprot/O67291 O67291]
+
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
−
** [http://www.uniprot.org/uniprot/Q9X1B8 Q9X1B8]
+
** [http://www.uniprot.org/uniprot/P93355 P93355]
−
** [http://www.uniprot.org/uniprot/O34559 O34559]
+
** [http://www.uniprot.org/uniprot/O81691 O81691]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
−
{{#set: ec number=EC-2.5.1.31}}
+
** [http://www.uniprot.org/uniprot/O81660 O81660]
−
{{#set: gene associated=Tiso_gene_8531}}
+
** [http://www.uniprot.org/uniprot/O81659 O81659]
−
{{#set: in pathway=PWY-5785}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=isopentenyl-diphosphate_delta-isomerase}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-synechocystis|orthology-esiliculosus}}
+
{{#set: ec number=EC-5.3.3.2}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_8653}}
 +
{{#set: in pathway=PWY-6174|PWY-922|PWY-6859|NONMEVIPP-PWY|PWY-7102|PWY-7391|PWY-5123|PWY-7560|PWY-6383|PWY-7524}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:21, 21 March 2018

Reaction IPPISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • isopentenyl-diphosphate_delta-isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] <=> 1 dimethylallyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis: PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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