Difference between revisions of "Tiso gene 1389"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_1389 == * right end position: ** 11614 * transcription direction: ** POSITIVE * left end position: ** 9816 * centisome position: ** 40.9597...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] ==
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== Gene Tiso_gene_1389 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11614
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.2.1.3 EC-1.2.1.3]
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** POSITIVE
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* left end position:
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** 9816
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* centisome position:
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** 40.959732   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RIBOFLAVINSYNDEAM-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''=>''' 1 [[5-HYDROXYINDOLE_ACETATE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 5-hydroxyindole acetaldehyde[c] '''=>''' 1 5-hydroxyindole acetate[c] '''+''' 2 H+[c] '''+''' 1 NADH[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RIBOFLAVINSYNREDUC-RXN]]
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* [[Tiso_gene_7322]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3513]]
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* [[RIBOSYN2-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=11614}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31215 31215]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=9816}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04903 R04903]
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{{#set: centisome position=40.959732    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RIBOFLAVINSYNDEAM-RXN|RIBOFLAVINSYNREDUC-RXN}}
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{{#set: ec number=EC-1.2.1.3}}
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{{#set: pathway associated=RIBOSYN2-PWY}}
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{{#set: gene associated=Tiso_gene_7322|Tiso_gene_3513}}
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{{#set: in pathway=PWY-6313}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 19:21, 21 March 2018

Gene Tiso_gene_1389

  • right end position:
    • 11614
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9816
  • centisome position:
    • 40.959732
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1389&oldid=41120"