Difference between revisions of "PWY-6963"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_mitochondrial-proc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-28...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963] ==
* direction:
+
* taxonomic range:
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
** probable_mitochondrial-processingpeptidasesubunitbeta
+
** ammonia assimilation cycle I
** cytochrome_b6-fcomplexiron-sulfurchloroplastic
+
** ubiquinol-cytochrome_c_reductase
+
* ec number:
+
** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** GS/GOGAT pathway
  
== Reaction Formula ==
+
== Reaction(s) found ==
* With identifiers:
+
'''4''' reactions found over '''6''' reactions in the full pathway
** 4 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''=>''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e] '''+''' 2 [[Oxidized-CycA1-cytochromes]][e]
+
* [[GLNSYN-PWY]]
* With common name(s):
+
** 0 associated gene:
** 4 H+[c] '''+''' 1 a ubiquinone[c] '''+''' 2 a reduced CycA1 cytochrome[e] '''=>''' 1 an ubiquinol[c] '''+''' 2 H+[e] '''+''' 2 an oxidized CycA1 cytochrome[e]
+
* [[GLUGLNSYN-PWY]]
 
+
** 0 associated gene:
== Genes associated with this reaction  ==
+
* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
Genes have been associated with this reaction based on different elements listed below.
+
** 3 associated gene(s):
* [[Tiso_gene_7235]]
+
*** [[Tiso_gene_11511]]
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_1154]]
* [[Tiso_gene_9627]]
+
*** [[Tiso_gene_2581]]
** IN-SILICO_ANNOTATION
+
** 5 reconstruction source(s) associated:
***EC-NUMBER
+
*** [[orthology-athaliana]]
** EXPERIMENTAL_ANNOTATION
+
*** [[orthology-creinhardtii]]
***EC-NUMBER
+
*** [[orthology-synechocystis]]
* [[Tiso_gene_15926]]
+
*** [[orthology-esiliculosus]]
** IN-SILICO_ANNOTATION
+
*** [[manual-primary_network]]
***EC-NUMBER
+
* [[GLUTAMINESYN-RXN]]
* [[Tiso_gene_4973]]
+
** 4 associated gene(s):
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_14842]]
* [[Tiso_gene_18330]]
+
*** [[Tiso_gene_13754]]
** IN-SILICO_ANNOTATION
+
*** [[Tiso_gene_13820]]
***AUTOMATED-NAME-MATCH
+
*** [[Tiso_gene_6647]]
== Pathways  ==
+
** 6 reconstruction source(s) associated:
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
+
*** [[annotation-experimental_annotation]]
** '''3''' reactions found over '''6''' reactions in the full pathway
+
*** [[orthology-esiliculosus]]
== Reconstruction information  ==
+
*** [[annotation-in-silico_annotation]]
* Category: [[orthology]]
+
*** [[orthology-athaliana]]
** Source: [[orthology-esiliculosus]]
+
*** [[orthology-synechocystis]]
*** Tool: [[pantograph]]
+
*** [[manual-primary_network]]
* Category: [[annotation]]
+
== Reaction(s) not found ==
** Source: [[annotation-experimental_annotation]]
+
*** Tool: [[pathwaytools]]
+
** Source: [[annotation-in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: taxonomic range=TAX-2836}}
{{#set: common name=probable_mitochondrial-processingpeptidasesubunitbeta}}
+
{{#set: taxonomic range=TAX-4751}}
{{#set: common name=cytochrome_b6-fcomplexiron-sulfurchloroplastic}}
+
{{#set: taxonomic range=TAX-33090}}
{{#set: common name=ubiquinol-cytochrome_c_reductase}}
+
{{#set: common name=ammonia assimilation cycle I}}
{{#set: ec number=EC-1.10.2.2}}
+
{{#set: common name=GS/GOGAT pathway}}
{{#set: gene associated=Tiso_gene_7235|Tiso_gene_9627|Tiso_gene_15926|Tiso_gene_4973|Tiso_gene_18330}}
+
{{#set: reaction found=4}}
{{#set: in pathway=PWY-6692}}
+
{{#set: total reaction=6}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: completion rate=67.0}}
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:21, 21 March 2018

Pathway PWY-6963

Reaction(s) found

4 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links