Difference between revisions of "PWY-6963"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_mitochondrial-proc...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-28...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
** probable_mitochondrial-processingpeptidasesubunitbeta
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** ammonia assimilation cycle I
** cytochrome_b6-fcomplexiron-sulfurchloroplastic
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** ubiquinol-cytochrome_c_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
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* Synonym(s):
 
* Synonym(s):
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** GS/GOGAT pathway
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''4''' reactions found over '''6''' reactions in the full pathway
** 4 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''=>''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e] '''+''' 2 [[Oxidized-CycA1-cytochromes]][e]
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* [[GLNSYN-PWY]]
* With common name(s):
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** 0 associated gene:
** 4 H+[c] '''+''' 1 a ubiquinone[c] '''+''' 2 a reduced CycA1 cytochrome[e] '''=>''' 1 an ubiquinol[c] '''+''' 2 H+[e] '''+''' 2 an oxidized CycA1 cytochrome[e]
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* [[GLUGLNSYN-PWY]]
 
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** 0 associated gene:
== Genes associated with this reaction  ==
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* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
Genes have been associated with this reaction based on different elements listed below.
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** 3 associated gene(s):
* [[Tiso_gene_7235]]
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*** [[Tiso_gene_11511]]
** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_1154]]
* [[Tiso_gene_9627]]
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*** [[Tiso_gene_2581]]
** IN-SILICO_ANNOTATION
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** 5 reconstruction source(s) associated:
***EC-NUMBER
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*** [[orthology-athaliana]]
** EXPERIMENTAL_ANNOTATION
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*** [[orthology-creinhardtii]]
***EC-NUMBER
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*** [[orthology-synechocystis]]
* [[Tiso_gene_15926]]
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*** [[orthology-esiliculosus]]
** IN-SILICO_ANNOTATION
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*** [[manual-primary_network]]
***EC-NUMBER
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* [[GLUTAMINESYN-RXN]]
* [[Tiso_gene_4973]]
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** 4 associated gene(s):
** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_14842]]
* [[Tiso_gene_18330]]
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*** [[Tiso_gene_13754]]
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13820]]
***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_6647]]
== Pathways  ==
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** 6 reconstruction source(s) associated:
* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
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*** [[annotation-experimental_annotation]]
** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-esiliculosus]]
== Reconstruction information  ==
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*** [[annotation-in-silico_annotation]]
* Category: [[orthology]]
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*** [[orthology-athaliana]]
** Source: [[orthology-esiliculosus]]
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*** [[orthology-synechocystis]]
*** Tool: [[pantograph]]
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*** [[manual-primary_network]]
* Category: [[annotation]]
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== Reaction(s) not found ==
** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2836}}
{{#set: common name=probable_mitochondrial-processingpeptidasesubunitbeta}}
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{{#set: taxonomic range=TAX-4751}}
{{#set: common name=cytochrome_b6-fcomplexiron-sulfurchloroplastic}}
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{{#set: taxonomic range=TAX-33090}}
{{#set: common name=ubiquinol-cytochrome_c_reductase}}
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{{#set: common name=ammonia assimilation cycle I}}
{{#set: ec number=EC-1.10.2.2}}
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{{#set: common name=GS/GOGAT pathway}}
{{#set: gene associated=Tiso_gene_7235|Tiso_gene_9627|Tiso_gene_15926|Tiso_gene_4973|Tiso_gene_18330}}
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{{#set: reaction found=4}}
{{#set: in pathway=PWY-6692}}
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{{#set: total reaction=6}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: completion rate=67.0}}
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:21, 21 March 2018

Pathway PWY-6963

Reaction(s) found

4 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links