Difference between revisions of "PWY-6142"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.16.5-RXN 3.4.16.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Carboxypeptidase Y ho...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.16.5-RXN 3.4.16.5-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** Carboxypeptidase Y homolog A
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** gluconeogenesis II (Methanobacterium thermoautotrophicum)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.4.16.5 EC-3.4.16.5]
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* Synonym(s):
 
* Synonym(s):
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** carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''14''' reactions in the full pathway
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** 1 [[Peptides-holder]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Peptides-holder]][c] '''+''' 1 [[Amino-Acids-20]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 a peptide[c] '''+''' 1 H2O[c] '''=>''' 1 a peptide[c] '''+''' 1 a proteinogenic amino acid[c]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_14718]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5619]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_13317]]
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* [[Tiso_gene_514]]
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** 7 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** [[orthology-athaliana]]
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* Category: [[annotation]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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* [[3PGAREARR-RXN]]
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** 16 associated gene(s):
 +
*** [[Tiso_gene_15048]]
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*** [[Tiso_gene_7201]]
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*** [[Tiso_gene_9922]]
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*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_2667]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
 +
*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
 +
*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PYRUVATE-CARBOXYLASE-RXN]]
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** 3 associated gene(s):
 +
*** [[Tiso_gene_15144]]
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*** [[Tiso_gene_15145]]
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*** [[Tiso_gene_2812]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
 +
*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_7660]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19962]]
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*** [[Tiso_gene_10646]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P11515 P11515]
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{{#set: common name=gluconeogenesis II (Methanobacterium thermoautotrophicum)}}
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** [http://www.uniprot.org/uniprot/P10619 P10619]
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{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
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** [http://www.uniprot.org/uniprot/P07519 P07519]
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{{#set: reaction found=8}}
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** [http://www.uniprot.org/uniprot/P00729 P00729]
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{{#set: total reaction=14}}
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** [http://www.uniprot.org/uniprot/P37891 P37891]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P37890 P37890]
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** [http://www.uniprot.org/uniprot/P38109 P38109]
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** [http://www.uniprot.org/uniprot/P52710 P52710]
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** [http://www.uniprot.org/uniprot/Q41005 Q41005]
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** [http://www.uniprot.org/uniprot/P52712 P52712]
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** [http://www.uniprot.org/uniprot/Q41689 Q41689]
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** [http://www.uniprot.org/uniprot/Q41691 Q41691]
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** [http://www.uniprot.org/uniprot/O13849 O13849]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Carboxypeptidase Y homolog A}}
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{{#set: ec number=EC-3.4.16.5}}
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{{#set: gene associated=Tiso_gene_514}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:21, 21 March 2018

Pathway PWY-6142

  • taxonomic range:
  • common name:
    • gluconeogenesis II (Methanobacterium thermoautotrophicum)
  • Synonym(s):
    • carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)

Reaction(s) found

8 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6142&oldid=41136"