Difference between revisions of "REDCITCYC"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14266 RXN-14266] == * direction: ** REVERSIBLE * common name: ** 3-hydroxyisovaleryl-CoA hydrat...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14266 RXN-14266] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** 3-hydroxyisovaleryl-CoA hydratase
+
** TCA cycle VIII (helicobacter)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** Krebs cycle
 +
** tricarboxylic acid cycle
 +
** TCA cycle
 +
** citric acid cycle
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''6''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[3-HYDROXY-ISOVALERYL-COA]][c] '''<=>''' 1 [[CPD-1083]][c] '''+''' 1 [[WATER]][c]
+
* [[ACONITATEDEHYDR-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 3-hydroxyisovaleryl-CoA[c] '''<=>''' 1 (E)-2-methylcrotonoyl-CoA[c] '''+''' 1 H2O[c]
+
*** [[Tiso_gene_13007]]
−
 
+
** 3 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_16145]]
+
*** [[orthology-synechocystis]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[ACONITATEHYDR-RXN]]
−
* [[Tiso_gene_5857]]
+
** 1 associated gene(s):
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_13007]]
−
* [[Tiso_gene_14257]]
+
** 2 reconstruction source(s) associated:
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_14262]]
+
*** [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[CITSYN-RXN]]
−
* [[Tiso_gene_6885]]
+
** 4 associated gene(s):
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_18030]]
−
== Pathways  ==
+
*** [[Tiso_gene_9601]]
−
== Reconstruction information  ==
+
*** [[Tiso_gene_9603]]
−
* Category: [[orthology]]
+
*** [[Tiso_gene_9602]]
−
** Source: [[orthology-esiliculosus]]
+
** 3 reconstruction source(s) associated:
−
*** Tool: [[pantograph]]
+
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[FUMHYDR-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_3691]]
 +
*** [[Tiso_gene_6720]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
* [[ISOCITDEH-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_18262]]
 +
*** [[Tiso_gene_10809]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[RXNI-2]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_6754]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=RXNI-3 RXNI-3]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31082 31082]
+
{{#set: common name=TCA cycle VIII (helicobacter)}}
−
* LIGAND-RXN:
+
{{#set: common name=Krebs cycle|tricarboxylic acid cycle|TCA cycle|citric acid cycle}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04137 R04137]
+
{{#set: reaction found=6}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: total reaction=9}}
−
{{#set: common name=3-hydroxyisovaleryl-CoA hydratase}}
+
{{#set: completion rate=67.0}}
−
{{#set: ec number=EC-4.2.1.17}}
+
−
{{#set: gene associated=Tiso_gene_16145|Tiso_gene_5857|Tiso_gene_14257|Tiso_gene_14262|Tiso_gene_6885}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 19:22, 21 March 2018

Pathway REDCITCYC

  • taxonomic range:
  • common name:
    • TCA cycle VIII (helicobacter)
  • Synonym(s):
    • Krebs cycle
    • tricarboxylic acid cycle
    • TCA cycle
    • citric acid cycle

Reaction(s) found

6 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=REDCITCYC&oldid=41168"