Difference between revisions of "PWY-4321"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-81 RXN66-81] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** fad-containing_monooxy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-81 RXN66-81] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
** ORF
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** L-glutamate degradation IV
** fad-containing_monooxygenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.14.13.8 EC-1.14.13.8]
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* Synonym(s):
 
* Synonym(s):
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** GABA shunt
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** 4-aminobutyrate shunt
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** γ-aminobutyrate shunt
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
** 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[NICOTINE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-2743]][c] '''+''' 1 [[NADP]][c]
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* [[GABATRANSAM-RXN]]
* With common name(s):
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** 1 associated gene(s):
** 1 NADPH[c] '''+''' 1 oxygen[c] '''+''' 1 (S)-nicotine[c] '''=>''' 1 H2O[c] '''+''' 1 nicotine-1'-N-oxide[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_11231]]
 
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** 1 reconstruction source(s) associated:
== Genes associated with this reaction  ==
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*** [[orthology-synechocystis]]
Genes have been associated with this reaction based on different elements listed below.
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* [[GLUTDECARBOX-RXN]]
* [[Tiso_gene_9613]]
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** 2 associated gene(s):
** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_10395]]
***EC-NUMBER
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*** [[Tiso_gene_9927]]
** [[pantograph]]-[[esiliculosus]]
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** 4 reconstruction source(s) associated:
* [[Tiso_gene_10094]]
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*** [[annotation-in-silico_annotation]]
** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
***EC-NUMBER
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*** [[orthology-creinhardtii]]
** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-synechocystis]]
* [[Tiso_gene_4]]
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* [[RXN-6903]]
** [[pantograph]]-[[esiliculosus]]
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** 2 associated gene(s):
* [[Tiso_gene_9139]]
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*** [[Tiso_gene_91]]
** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_777]]
== Pathways  ==
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** 1 reconstruction source(s) associated:
* [[PWY66-201]], nicotine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-201 PWY66-201]
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*** [[annotation-in-silico_annotation]]
** '''3''' reactions found over '''17''' reactions in the full pathway
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* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
== Reconstruction information  ==
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** 3 associated gene(s):
* Category: [[orthology]]
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*** [[Tiso_gene_777]]
** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_91]]
*** Tool: [[pantograph]]
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*** [[Tiso_gene_6952]]
* Category: [[annotation]]
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** 3 reconstruction source(s) associated:
** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
*** Tool: [[pathwaytools]]
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*** [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-6902 RXN-6902]
 
== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
{{#set: common name=ORF}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-4321 PWY-4321]
{{#set: common name=fad-containing_monooxygenase}}
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{{#set: taxonomic range=TAX-33090}}
{{#set: ec number=EC-1.14.13.8}}
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{{#set: common name=L-glutamate degradation IV}}
{{#set: gene associated=Tiso_gene_9613|Tiso_gene_10094|Tiso_gene_4|Tiso_gene_9139}}
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{{#set: common name=GABA shunt|4-aminobutyrate shunt|γ-aminobutyrate shunt}}
{{#set: in pathway=PWY66-201}}
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{{#set: reaction found=4}}
{{#set: reconstruction category=orthology|annotation}}
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{{#set: total reaction=5}}
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: completion rate=80.0}}
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:23, 21 March 2018

Pathway PWY-4321

  • taxonomic range:
  • common name:
    • L-glutamate degradation IV
  • Synonym(s):
    • GABA shunt
    • 4-aminobutyrate shunt
    • γ-aminobutyrate shunt

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links