Difference between revisions of "PWY-5154"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-DIPHOSPHATASE-RXN GUANOSINE-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANOSINE-DIPHOSPHATASE-RXN GUANOSINE-DIPHOSPHATASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** L-arginine biosynthesis III (via N-acetyl-L-citrulline)
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* ec number:
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** [http://enzyme.expasy.org/EC/3.6.1.42 EC-3.6.1.42]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[GDP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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* [[ACETYLGLUTKIN-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 GDP[c] '''+''' 1 H2O[c] '''=>''' 1 GMP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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*** [[Tiso_gene_13144]]
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** 5 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_12899]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[ACETYLORNTRANSAM-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_11231]]
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** [[pantograph]]-[[esiliculosus]]
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_20236]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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== Pathways  ==
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*** [[orthology-synechocystis]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[orthology]]
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* [[ARGSUCCINLYA-RXN]]
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** Source: [[orthology-athaliana]]
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** 1 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_2485]]
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** Source: [[orthology-esiliculosus]]
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** 7 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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* Category: [[annotation]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ARGSUCCINSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_12592]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[CARBPSYN-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_4976]]
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*** [[Tiso_gene_4975]]
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*** [[Tiso_gene_4685]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[N-ACETYLGLUTPREDUCT-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_8102]]
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*** [[Tiso_gene_6700]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[N-ACETYLTRANSFER-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_11663]]
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*** [[Tiso_gene_5365]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.3.9-RXN 2.1.3.9-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7933 RXN-7933]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22156 22156]
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{{#set: common name=L-arginine biosynthesis III (via N-acetyl-L-citrulline)}}
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* LIGAND-RXN:
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{{#set: reaction found=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00328 R00328]
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{{#set: total reaction=9}}
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* UNIPROT:
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{{#set: completion rate=78.0}}
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** [http://www.uniprot.org/uniprot/P32621 P32621]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.6.1.42}}
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{{#set: gene associated=Tiso_gene_12899|Tiso_gene_20236}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:23, 21 March 2018

Pathway PWY-5154

  • taxonomic range:
  • common name:
    • L-arginine biosynthesis III (via N-acetyl-L-citrulline)
  • Synonym(s):

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5154&oldid=41293"