Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6260 PWY-6260] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-77...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6260 PWY-6260] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-7742]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** thyroid hormone metabolism I (via deiodination)
+
** 3-oxoacyl-synthase
 +
** polyketide_synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''3''' reactions found over '''12''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-10604]]
+
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[ACETYL-ACP]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
−
** 1 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_20481]]
+
** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 an acetyl-[acp][c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 CO2[c]
−
** 1 reconstruction source(s) associated:
+
 
−
*** [[annotation-in-silico_annotation]]
+
== Genes associated with this reaction  ==
−
* [[RXN-12037]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 associated gene(s):
+
* Gene: [[Tiso_gene_5939]]
−
*** [[Tiso_gene_20481]]
+
** Source: [[annotation-in-silico_annotation]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: EC-NUMBER
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[THYROXINE-DEIODINASE-RXN]]
+
*** Assignment: EC-NUMBER
−
** 1 associated gene(s):
+
* Gene: [[Tiso_gene_500]]
−
*** [[Tiso_gene_20481]]
+
** Source: [[annotation-in-silico_annotation]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: EC-NUMBER
−
*** [[annotation-in-silico_annotation]]
+
* Gene: [[Tiso_gene_14485]]
−
== Reaction(s) not found ==
+
** Source: [[orthology-synechocystis]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.97.1.11-RXN 1.97.1.11-RXN]
+
** Source: [[orthology-esiliculosus]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10605 RXN-10605]
+
* Gene: [[Tiso_gene_13394]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12030 RXN-12030]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12031 RXN-12031]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12032 RXN-12032]
+
* Gene: [[Tiso_gene_136]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12033 RXN-12033]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12034 RXN-12034]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12035 RXN-12035]
+
* Gene: [[Tiso_gene_15991]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12036 RXN-12036]
+
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_19302]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-7742}}
+
* UNIPROT:
−
{{#set: common name=thyroid hormone metabolism I (via deiodination)}}
+
** [http://www.uniprot.org/uniprot/P23902 P23902]
−
{{#set: reaction found=3}}
+
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
−
{{#set: total reaction=12}}
+
** [http://www.uniprot.org/uniprot/P49327 P49327]
−
{{#set: completion rate=25.0}}
+
** [http://www.uniprot.org/uniprot/P43710 P43710]
 +
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
 +
** [http://www.uniprot.org/uniprot/O67612 O67612]
 +
** [http://www.uniprot.org/uniprot/P20582 P20582]
 +
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
 +
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
 +
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
 +
** [http://www.uniprot.org/uniprot/P43711 P43711]
 +
** [http://www.uniprot.org/uniprot/O25284 O25284]
 +
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
 +
** [http://www.uniprot.org/uniprot/O34340 O34340]
 +
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 +
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 +
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 +
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 +
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=3-oxoacyl-synthase}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: gene associated=Tiso_gene_5939|Tiso_gene_500|Tiso_gene_14485|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_15991|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876}}
 +
{{#set: in pathway=PWY-5965|PWY-5966|FASYN-INITIAL-PWY|PWY-7388}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:23, 21 March 2018

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5965, fatty acid biosynthesis initiation III: PWY-5965
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5966, fatty acid biosynthesis initiation II: PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli): FASYN-INITIAL-PWY
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3-OXOACYL-ACP-SYNTH-BASE-RXN&oldid=41313"