Difference between revisions of "RXN-12710"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-_c-acetyltransferase...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12710 RXN-12710] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** mixed acid fermentation
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** acetyl-_c-acetyltransferase
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** 3-ketoacyl-_thiolase
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** thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
−
** fermentation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''9''' reactions found over '''16''' reactions in the full pathway
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* With identifiers:
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* [[ACETALD-DEHYDROG-RXN]]
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** 1 [[CPD-13699]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-13700]][c] '''+''' 1 [[ACETYL-COA]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_7649]]
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** 1 3,22-dioxochol-4-en-24-oyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 3-oxo-4-pregnene-20-carboxyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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*** [[Tiso_gene_2052]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_17451]]
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* [[ACONITATEDEHYDR-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13007]]
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** Source: [[annotation-experimental_annotation]]
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** 3 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_15327]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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* [[ACONITATEHYDR-RXN]]
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* Gene: [[Tiso_gene_3855]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_13007]]
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*** Assignment: EC-NUMBER
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** 2 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_3856]]
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* [[ALCOHOL-DEHYDROG-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** 6 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_7649]]
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* Gene: [[Tiso_gene_10116]]
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*** [[Tiso_gene_18459]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6562]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_6563]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_5424]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5425]]
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== Pathways  ==
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** 2 reconstruction source(s) associated:
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* [[PWY-6948]], sitosterol degradation to androstenedione: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6948 PWY-6948]
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*** [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''18''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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* [[PWY-6946]], cholesterol degradation to androstenedione II (cholesterol dehydrogenase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6946 PWY-6946]
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* [[CITSYN-RXN]]
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** '''3''' reactions found over '''22''' reactions in the full pathway
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** 4 associated gene(s):
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* [[PWY-6945]], cholesterol degradation to androstenedione I (cholesterol oxidase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6945 PWY-6945]
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*** [[Tiso_gene_18030]]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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*** [[Tiso_gene_9601]]
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== Reconstruction information  ==
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*** [[Tiso_gene_9603]]
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* Category: [[annotation]]
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*** [[Tiso_gene_9602]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** [[manual-primary_network]]
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_1990]]
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*** [[Tiso_gene_2323]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPDEPHOS-RXN]]
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** 4 associated gene(s):
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−
*** [[Tiso_gene_14504]]
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*** [[Tiso_gene_18206]]
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*** [[Tiso_gene_974]]
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*** [[Tiso_gene_14505]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=DLACTDEHYDROGNAD-RXN DLACTDEHYDROGNAD-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FHLMULTI-RXN FHLMULTI-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=PHOSACETYLTRANS-RXN PHOSACETYLTRANS-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVFORMLY-RXN PYRUVFORMLY-RXN]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=thiolase}}
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{{#set: common name=mixed acid fermentation}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: common name=fermentation}}
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{{#set: gene associated=Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_3856|Tiso_gene_10116}}
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{{#set: reaction found=9}}
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{{#set: in pathway=PWY-6948|PWY-6946|PWY-6945}}
−
{{#set: total reaction=16}}
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{{#set: reconstruction category=annotation}}
−
{{#set: completion rate=56.0}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:26, 21 March 2018

Reaction RXN-12710

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetyl-_c-acetyltransferase
    • 3-ketoacyl-_thiolase
    • thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3,22-dioxochol-4-en-24-oyl-CoA[c] + 1 coenzyme A[c] => 1 3-oxo-4-pregnene-20-carboxyl-CoA[c] + 1 acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6948, sitosterol degradation to androstenedione: PWY-6948
    • 2 reactions found over 18 reactions in the full pathway
  • PWY-6946, cholesterol degradation to androstenedione II (cholesterol dehydrogenase): PWY-6946
    • 3 reactions found over 22 reactions in the full pathway
  • PWY-6945, cholesterol degradation to androstenedione I (cholesterol oxidase): PWY-6945
    • 2 reactions found over 17 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12710&oldid=41569"