Difference between revisions of "OXALATE-DECARBOXYLASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALATE-DECARBOXYLASE-RXN OXALATE-DECARBOXYLASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number:...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALATE-DECARBOXYLASE-RXN OXALATE-DECARBOXYLASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/4.1.1.2 EC-4.1.1.2]
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** superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''12''' reactions found over '''17''' reactions in the full pathway
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* With identifiers:
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* [[CDPREDUCT-RXN]]
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** 1 [[OXALATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_10617]]
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** 1 oxalate[c] '''+''' 1 H+[c] '''=>''' 1 formate[c] '''+''' 1 CO2[c]
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*** [[Tiso_gene_9916]]
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*** [[Tiso_gene_9915]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_10138]]
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Genes have been associated with this reaction based on different elements listed below.
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** 6 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_13981]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[PWY-6698]], oxalate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6698 PWY-6698]
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*** [[orthology-athaliana]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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== Reconstruction information  ==
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*** [[manual-primary_network]]
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* Category: [[orthology]]
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* [[DCDPKIN-RXN]]
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** Source: [[orthology-synechocystis]]
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** 6 associated gene(s):
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_9290]]
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_16529]]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_195]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DTDPKIN-RXN]]
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** 6 associated gene(s):
+
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_16529]]
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*** [[Tiso_gene_195]]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_9290]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DTMPKI-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_3755]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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* [[DUDPKIN-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_17272]]
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*** [[Tiso_gene_17271]]
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*** [[Tiso_gene_9290]]
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*** [[Tiso_gene_16529]]
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*** [[Tiso_gene_18224]]
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*** [[Tiso_gene_195]]
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** 6 reconstruction source(s) associated:
+
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*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[DUTP-PYROP-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18793]]
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*** [[Tiso_gene_18792]]
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** 3 reconstruction source(s) associated:
+
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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* [[PWY-7184]]
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** 0 associated gene:
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* [[PWY-7187]]
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** 0 associated gene:
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* [[RIBONUCLEOSIDE-DIP-REDUCTII-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_9915]]
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*** [[Tiso_gene_10138]]
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*** [[Tiso_gene_9916]]
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*** [[Tiso_gene_10617]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-722]]
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** 4 associated gene(s):
+
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*** [[Tiso_gene_10617]]
+
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*** [[Tiso_gene_10138]]
+
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*** [[Tiso_gene_9915]]
+
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*** [[Tiso_gene_9916]]
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** 3 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[THYMIDYLATESYN-RXN]]
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** 2 associated gene(s):
+
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*** [[Tiso_gene_18478]]
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*** [[Tiso_gene_7708]]
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** 2 reconstruction source(s) associated:
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*** [[manual-primary_network]]
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*** [[annotation-in-silico_annotation]]
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* [[UDPREDUCT-RXN]]
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** 4 associated gene(s):
+
−
*** [[Tiso_gene_9915]]
+
−
*** [[Tiso_gene_10617]]
+
−
*** [[Tiso_gene_10138]]
+
−
*** [[Tiso_gene_9916]]
+
−
** 6 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
== Reaction(s) not found ==
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−
* [http://metacyc.org/META/NEW-IMAGE?object=DCTP-DEAM-RXN DCTP-DEAM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-723 RXN0-723]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-724 RXN0-724]
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== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY0-166 PWY0-166]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16509 16509]
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00522 R00522]
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{{#set: common name=superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=12}}
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{{#set: ec number=EC-4.1.1.2}}
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{{#set: total reaction=17}}
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{{#set: gene associated=Tiso_gene_13981}}
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{{#set: completion rate=71.0}}
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{{#set: in pathway=PWY-6698}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:26, 21 March 2018

Reaction OXALATE-DECARBOXYLASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6698, oxalate degradation V: PWY-6698
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links




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