Difference between revisions of "HOMOSERSYN-PWY"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERLEU-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERLEU-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY] ==
−
* direction:
+
* taxonomic range:
−
** REVERSIBLE
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** branched-chain_amino_acid_aminotransferase
+
** L-homoserine biosynthesis
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.6.1.6 EC-2.6.1.6]
+
−
** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''3''' reactions found over '''3''' reactions in the full pathway
−
** 1 [[LEU]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2K-4CH3-PENTANOATE]][c]
+
* [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
−
* With common name(s):
+
** 1 associated gene(s):
−
** 1 L-leucine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 4-methyl-2-oxopentanoate[c]
+
*** [[Tiso_gene_18603]]
−
 
+
** 7 reconstruction source(s) associated:
−
== Genes associated with this reaction  ==
+
*** [[annotation-experimental_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_18403]]
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** [[orthology-athaliana]]
−
* [[Tiso_gene_14984]]
+
*** [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
*** [[manual-primary_network]]
−
***EC-NUMBER
+
*** [[orthology-creinhardtii]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[ASPARTATEKIN-RXN]]
−
***EC-NUMBER
+
** 4 associated gene(s):
−
** [[pantograph]]-[[synechocystis]]
+
*** [[Tiso_gene_4345]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[Tiso_gene_17057]]
−
== Pathways  ==
+
*** [[Tiso_gene_13809]]
−
* [[PWY-7767]], leucine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7767 PWY-7767]
+
*** [[Tiso_gene_16097]]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** 7 reconstruction source(s) associated:
−
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
+
*** [[annotation-experimental_annotation]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
*** [[orthology-esiliculosus]]
−
* [[PWY-5076]], L-leucine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5076 PWY-5076]
+
*** [[annotation-in-silico_annotation]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
*** [[orthology-athaliana]]
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
*** [[orthology-synechocystis]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
*** [[manual-primary_network]]
−
== Reconstruction information  ==
+
*** [[orthology-creinhardtii]]
−
* Category: [[orthology]]
+
* [[HOMOSERDEHYDROG-RXN]]
−
** Source: [[orthology-synechocystis]]
+
** 3 associated gene(s):
−
*** Tool: [[pantograph]]
+
*** [[Tiso_gene_5558]]
−
** Source: [[orthology-esiliculosus]]
+
*** [[Tiso_gene_1148]]
−
*** Tool: [[pantograph]]
+
*** [[Tiso_gene_4345]]
−
* Category: [[manual]]
+
** 3 reconstruction source(s) associated:
−
** Source: [[manual-primary_network]]
+
*** [[manual-primary_network]]
−
* Category: [[annotation]]
+
*** [[annotation-in-silico_annotation]]
−
** Source: [[annotation-in-silico_annotation]]
+
*** [[orthology-esiliculosus]]
−
*** Tool: [[pathwaytools]]
+
== Reaction(s) not found ==
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18321 18321]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-33090}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
+
{{#set: taxonomic range=TAX-4751}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
{{#set: common name=L-homoserine biosynthesis}}
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
{{#set: reaction found=3}}
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
{{#set: total reaction=3}}
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=branched-chain_amino_acid_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.6}}
+
−
{{#set: ec number=EC-2.6.1.42}}
+
−
{{#set: gene associated=Tiso_gene_18403|Tiso_gene_14984}}
+
−
{{#set: in pathway=PWY-7767|LEU-DEG2-PWY|PWY-5076|LEUSYN-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:26, 21 March 2018

Pathway HOMOSERSYN-PWY

Reaction(s) found

3 reactions found over 3 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HOMOSERSYN-PWY&oldid=41627"