Difference between revisions of "PWY-7490"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7490 PWY-7490] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7490 PWY-7490] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
−
** coproporphyrinogen-iii_oxidase
+
** patulin biosynthesis
−
** coproporphyrinogen_iii_oxidase_chloroplast
+
−
** coproporphyrinogen_oxidase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''1''' reactions found over '''15''' reactions in the full pathway
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[PROTON]][c] '''=>''' 2 [[CARBON-DIOXIDE]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c]
+
* [[2.3.1.165-RXN]]
−
* With common name(s):
+
** 5 associated gene(s):
−
** 1 oxygen[c] '''+''' 1 coproporphyrinogen III[c] '''+''' 2 H+[c] '''=>''' 2 CO2[c] '''+''' 2 H2O[c] '''+''' 1 protoporphyrinogen IX[c]
+
*** [[Tiso_gene_136]]
−
 
+
*** [[Tiso_gene_500]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_13394]]
−
Genes have been associated with this reaction based on different elements listed below.
+
*** [[Tiso_gene_135]]
−
* [[Tiso_gene_2247]]
+
*** [[Tiso_gene_10876]]
−
** IN-SILICO_ANNOTATION
+
** 1 reconstruction source(s) associated:
−
***EC-NUMBER
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
== Reaction(s) not found ==
−
** [[pantograph]]-[[synechocystis]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.97-RXN 1.1.1.97-RXN]
−
** [[pantograph]]-[[esiliculosus]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=3-OH-BENZALDEHYDE-DEHYDROG-NADP+-RXN 3-OH-BENZALDEHYDE-DEHYDROG-NADP+-RXN]
−
** [[pantograph]]-[[creinhardtii]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=6-METHYLSALICYLATE-DECARBOXYLASE-RXN 6-METHYLSALICYLATE-DECARBOXYLASE-RXN]
−
* [[Tiso_gene_2246]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15470 RXN-15470]
−
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15472 RXN-15472]
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15473 RXN-15473]
−
** EXPERIMENTAL_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15475 RXN-15475]
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15478 RXN-15478]
−
* [[Tiso_gene_13364]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15480 RXN-15480]
−
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15481 RXN-15481]
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15482 RXN-15482]
−
* [[Tiso_gene_13365]]
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15483 RXN-15483]
−
** IN-SILICO_ANNOTATION
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15484 RXN-15484]
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15485 RXN-15485]
−
* [[Tiso_gene_3671]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: taxonomic range=TAX-4751}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
+
{{#set: common name=patulin biosynthesis}}
−
* LIGAND-RXN:
+
{{#set: reaction found=1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
+
{{#set: total reaction=15}}
−
* UNIPROT:
+
{{#set: completion rate=7.0}}
−
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
+
−
** [http://www.uniprot.org/uniprot/P36552 P36552]
+
−
** [http://www.uniprot.org/uniprot/O25376 O25376]
+
−
** [http://www.uniprot.org/uniprot/P36553 P36553]
+
−
** [http://www.uniprot.org/uniprot/P33771 P33771]
+
−
** [http://www.uniprot.org/uniprot/P43899 P43899]
+
−
** [http://www.uniprot.org/uniprot/O25824 O25824]
+
−
** [http://www.uniprot.org/uniprot/P54304 P54304]
+
−
** [http://www.uniprot.org/uniprot/P11353 P11353]
+
−
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
+
−
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
+
−
** [http://www.uniprot.org/uniprot/P36551 P36551]
+
−
** [http://www.uniprot.org/uniprot/P35055 P35055]
+
−
** [http://www.uniprot.org/uniprot/P43898 P43898]
+
−
** [http://www.uniprot.org/uniprot/P72848 P72848]
+
−
** [http://www.uniprot.org/uniprot/P73245 P73245]
+
−
** [http://www.uniprot.org/uniprot/P74132 P74132]
+
−
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
+
−
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
+
−
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
+
−
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
+
−
** [http://www.uniprot.org/uniprot/P95651 P95651]
+
−
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=coproporphyrinogen-iii_oxidase}}
+
−
{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
+
−
{{#set: common name=coproporphyrinogen_oxidase}}
+
−
{{#set: ec number=EC-1.3.3.3}}
+
−
{{#set: gene associated=Tiso_gene_2247|Tiso_gene_2246|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_3671}}
+
−
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:27, 21 March 2018

Pathway PWY-7490

  • taxonomic range:
  • common name:
    • patulin biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 15 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7490&oldid=41753"