Difference between revisions of "RXN0-1461"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDPGALDOL-RXN KDPGALDOL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** coproporphyrinogen-iii_oxidase
 +
** coproporphyrinogen_iii_oxidase_chloroplast
 +
** coproporphyrinogen_oxidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.2.55 EC-4.1.2.55]
+
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
−
** [http://enzyme.expasy.org/EC/4.1.2.14 EC-4.1.2.14]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-dehydro-3-deoxy-D-gluconate 6-phosphate[c] '''=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c]
+
** 1 oxygen[c] '''+''' 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12620]]
+
* Gene: [[Tiso_gene_3671]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_2247]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13364]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13365]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
+
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7310]], D-glucosaminate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7310 PWY-7310]
+
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6507 PWY-6507]
+
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GALACTUROCAT-PWY GALACTUROCAT-PWY]
+
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff pathway I: [http://metacyc.org/META/NEW-IMAGE?object=ENTNER-DOUDOROFF-PWY ENTNER-DOUDOROFF-PWY]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7562 PWY-7562]
+
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7242]], D-fructuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7242 PWY-7242]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17089 17089]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
+
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
+
** [http://www.uniprot.org/uniprot/P36552 P36552]
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
+
** [http://www.uniprot.org/uniprot/O25376 O25376]
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
+
** [http://www.uniprot.org/uniprot/P36553 P36553]
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
+
** [http://www.uniprot.org/uniprot/P33771 P33771]
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
+
** [http://www.uniprot.org/uniprot/P43899 P43899]
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
+
** [http://www.uniprot.org/uniprot/O25824 O25824]
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
+
** [http://www.uniprot.org/uniprot/P54304 P54304]
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
+
** [http://www.uniprot.org/uniprot/P11353 P11353]
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
+
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
+
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
+
** [http://www.uniprot.org/uniprot/P36551 P36551]
 +
** [http://www.uniprot.org/uniprot/P35055 P35055]
 +
** [http://www.uniprot.org/uniprot/P43898 P43898]
 +
** [http://www.uniprot.org/uniprot/P72848 P72848]
 +
** [http://www.uniprot.org/uniprot/P73245 P73245]
 +
** [http://www.uniprot.org/uniprot/P74132 P74132]
 +
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 +
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 +
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 +
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 +
** [http://www.uniprot.org/uniprot/P95651 P95651]
 +
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.2.55}}
+
{{#set: common name=coproporphyrinogen-iii_oxidase}}
−
{{#set: ec number=EC-4.1.2.14}}
+
{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
−
{{#set: gene associated=Tiso_gene_12620}}
+
{{#set: common name=coproporphyrinogen_oxidase}}
−
{{#set: in pathway=PWY-2221|PWY-7310|PWY-6507|GALACTUROCAT-PWY|ENTNER-DOUDOROFF-PWY|PWY-7562|PWY-7242}}
+
{{#set: ec number=EC-1.3.3.3}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_3671|Tiso_gene_2247|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_2246}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:27, 21 March 2018

Reaction RXN0-1461

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
    • coproporphyrinogen_iii_oxidase_chloroplast
    • coproporphyrinogen_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-1461&oldid=41765"