Difference between revisions of "RXN-12459"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] == * direction: ** REVERSIBLE * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12459 RXN-12459] == * direction: ** LEFT-TO-RIGHT * common name: ** trna_(guanine-n1)-methyltra...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOHEMEFERROCHELAT-RXN PROTOHEMEFERROCHELAT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12459 RXN-12459] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ferrochelatase
+
** trna_(guanine-n1)-methyltransferase_family_protein
 +
** trna_(guanine-n1-)-methyltransferase_domain_containing_protein
 +
** mitochondrial_ribonuclease_p_protein_1_homolog
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.99.1.1 EC-4.99.1.1]
+
** [http://enzyme.expasy.org/EC/2.1.1.221 EC-2.1.1.221]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 1 [[FE+2]][c]
+
** 1 [[Guanine9-in-tRNA]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[tRNA-Containing-N1-Methylguanine-9]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ferroheme b[c] '''+''' 2 H+[c] '''<=>''' 1 protoporphyrin IX[c] '''+''' 1 Fe2+[c]
+
** 1 a guanine9 in tRNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 an N1-methylguanine9 in tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3284]]
+
* Gene: [[Tiso_gene_5025]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_910]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_909]]
−
* [[Tiso_gene_15900]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_299]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
+
{{#set: common name=trna_(guanine-n1)-methyltransferase_family_protein}}
−
* LIGAND-RXN:
+
{{#set: common name=trna_(guanine-n1-)-methyltransferase_domain_containing_protein}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
+
{{#set: common name=mitochondrial_ribonuclease_p_protein_1_homolog}}
−
* UNIPROT:
+
{{#set: ec number=EC-2.1.1.221}}
−
** [http://www.uniprot.org/uniprot/P22830 P22830]
+
{{#set: gene associated=Tiso_gene_5025|Tiso_gene_910|Tiso_gene_909|Tiso_gene_299}}
−
** [http://www.uniprot.org/uniprot/P22315 P22315]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P28602 P28602]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q05338 Q05338]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P42043 P42043]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P23871 P23871]
+
−
** [http://www.uniprot.org/uniprot/P32396 P32396]
+
−
** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
+
−
** [http://www.uniprot.org/uniprot/P56107 P56107]
+
−
** [http://www.uniprot.org/uniprot/O67083 O67083]
+
−
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
+
−
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
+
−
** [http://www.uniprot.org/uniprot/P22600 P22600]
+
−
** [http://www.uniprot.org/uniprot/P43868 P43868]
+
−
** [http://www.uniprot.org/uniprot/P16622 P16622]
+
−
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
+
−
** [http://www.uniprot.org/uniprot/P43413 P43413]
+
−
** [http://www.uniprot.org/uniprot/P54225 P54225]
+
−
** [http://www.uniprot.org/uniprot/P42045 P42045]
+
−
** [http://www.uniprot.org/uniprot/O64391 O64391]
+
−
** [http://www.uniprot.org/uniprot/P42044 P42044]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ferrochelatase}}
+
−
{{#set: ec number=EC-4.99.1.1}}
+
−
{{#set: gene associated=Tiso_gene_3284|Tiso_gene_15900}}
+
−
{{#set: in pathway=PWY0-1415|HEMESYN2-PWY|HEME-BIOSYNTHESIS-II}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:28, 21 March 2018

Reaction RXN-12459

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • trna_(guanine-n1)-methyltransferase_family_protein
    • trna_(guanine-n1-)-methyltransferase_domain_containing_protein
    • mitochondrial_ribonuclease_p_protein_1_homolog
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12459&oldid=41856"