Difference between revisions of "RXN-9535"

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(Created page with "Category:Gene == Gene Tiso_gene_1791 == * left end position: ** 16540 * transcription direction: ** NEGATIVE * right end position: ** 20654 * centisome position: ** 76.323...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_1791 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9535 RXN-9535] ==
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* left end position:
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* direction:
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** 16540
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** polyketide_synthase
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* right end position:
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** 3-oxoacyl-synthase
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** 20654
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 76.3232   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** β-ketoacyl-ACP synthase I
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** β-ketoacyl-acyl carrier protein synthetase
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** β-ketoacyl-[acyl carrier protein] synthase
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** condensing enzyme
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** β-ketoacyl acyl carrier protein synthase
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** 3-oxoacyl-[acyl-carrier-protein] synthase
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** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[MONOPHENOL-MONOOXYGENASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN-13061]]
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** 1 a malonyl-[acp][c] '''+''' 1 a dodecanoyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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** in-silico_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN-5861]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_500]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[PWY-6955]]
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* Gene: [[Tiso_gene_13394]]
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* [[PWY-6133]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6481]]
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*** Assignment: EC-NUMBER
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* [[PWY-3581]]
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* Gene: [[Tiso_gene_15991]]
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* [[PWY-5399]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14485]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19302]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10876]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5939]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=16540}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: right end position=20654}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: centisome position=76.3232    }}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: reaction associated=MONOPHENOL-MONOOXYGENASE-RXN|RXN-13061|RXN-5861}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: pathway associated=PWY-6955|PWY-6133|PWY-6481|PWY-3581|PWY-5399}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: common name=β-ketoacyl-ACP synthase I|β-ketoacyl-acyl carrier protein synthetase|β-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|β-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)}}
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{{#set: gene associated=Tiso_gene_500|Tiso_gene_13394|Tiso_gene_15991|Tiso_gene_14485|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_10876|Tiso_gene_5939|Tiso_gene_136}}
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{{#set: in pathway=PWY-5971}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:32, 21 March 2018

Reaction RXN-9535

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):
    • β-ketoacyl-ACP synthase I
    • β-ketoacyl-acyl carrier protein synthetase
    • β-ketoacyl-[acyl carrier protein] synthase
    • condensing enzyme
    • β-ketoacyl acyl carrier protein synthase
    • 3-oxoacyl-[acyl-carrier-protein] synthase
    • acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • "β-ketoacyl-[acyl carrier protein] synthase" cannot be used as a page name in this wiki.
  • "3-oxoacyl-[acyl-carrier-protein] synthase" cannot be used as a page name in this wiki.
  • "acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9535&oldid=42281"