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| − | [[Category:Pathway]] | + | [[Category:Reaction]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7511 PWY-7511] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.88-RXN 3.5.1.88-RXN] == |
| − | * taxonomic range: | + | * direction: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] | + | ** LEFT-TO-RIGHT |
| | * common name: | | * common name: |
| − | ** protein ubiquitylation | + | ** polypeptide_deformylase |
| | + | * ec number: |
| | + | ** [http://enzyme.expasy.org/EC/3.5.1.88 EC-3.5.1.88] |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reaction Formula == |
| − | '''9''' reactions found over '''9''' reactions in the full pathway
| + | * With identifiers: |
| − | * [[RXN-15556]] | + | ** 1 [[FORMYL-L-METHIONYL-PEPTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[METHIONYL-PEPTIDE]][c] |
| − | ** 94 associated gene(s):
| + | * With common name(s): |
| − | *** [[Tiso_gene_8801]] | + | ** 1 a [protein] N-terminal-formyl-L-methionine[c] '''+''' 1 H2O[c] '''=>''' 1 formate[c] '''+''' 1 an N-terminal L-methionyl-[protein][c] |
| − | *** [[Tiso_gene_1253]]
| + | |
| − | *** [[Tiso_gene_8636]]
| + | == Genes associated with this reaction == |
| − | *** [[Tiso_gene_8048]]
| + | Genes have been associated with this reaction based on different elements listed below. |
| − | *** [[Tiso_gene_1588]]
| + | * Gene: [[Tiso_gene_14998]] |
| − | *** [[Tiso_gene_16913]]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | *** [[Tiso_gene_18824]]
| + | *** Assignment: EC-NUMBER |
| − | *** [[Tiso_gene_4460]]
| + | == Pathways == |
| − | *** [[Tiso_gene_1427]] | + | == Reconstruction information == |
| − | *** [[Tiso_gene_10782]]
| + | * Category: [[annotation]] |
| − | *** [[Tiso_gene_14452]]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | *** [[Tiso_gene_12619]]
| + | *** Tool: [[pathwaytools]] |
| − | *** [[Tiso_gene_15214]]
| + | |
| − | *** [[Tiso_gene_6946]]
| + | |
| − | *** [[Tiso_gene_14181]]
| + | |
| − | *** [[Tiso_gene_612]]
| + | |
| − | *** [[Tiso_gene_4966]]
| + | |
| − | *** [[Tiso_gene_16642]]
| + | |
| − | *** [[Tiso_gene_5622]]
| + | |
| − | *** [[Tiso_gene_9520]]
| + | |
| − | *** [[Tiso_gene_17112]]
| + | |
| − | *** [[Tiso_gene_19647]]
| + | |
| − | *** [[Tiso_gene_6902]]
| + | |
| − | *** [[Tiso_gene_1592]]
| + | |
| − | *** [[Tiso_gene_13619]]
| + | |
| − | *** [[Tiso_gene_1587]]
| + | |
| − | *** [[Tiso_gene_557]]
| + | |
| − | *** [[Tiso_gene_17196]]
| + | |
| − | *** [[Tiso_gene_6910]]
| + | |
| − | *** [[Tiso_gene_2226]]
| + | |
| − | *** [[Tiso_gene_14650]]
| + | |
| − | *** [[Tiso_gene_2802]]
| + | |
| − | *** [[Tiso_gene_7719]]
| + | |
| − | *** [[Tiso_gene_14182]]
| + | |
| − | *** [[Tiso_gene_1589]]
| + | |
| − | *** [[Tiso_gene_14360]]
| + | |
| − | *** [[Tiso_gene_1582]]
| + | |
| − | *** [[Tiso_gene_1590]]
| + | |
| − | *** [[Tiso_gene_14567]]
| + | |
| − | *** [[Tiso_gene_1593]]
| + | |
| − | *** [[Tiso_gene_2932]]
| + | |
| − | *** [[Tiso_gene_558]]
| + | |
| − | *** [[Tiso_gene_15624]]
| + | |
| − | *** [[Tiso_gene_3211]]
| + | |
| − | *** [[Tiso_gene_17030]]
| + | |
| − | *** [[Tiso_gene_14451]]
| + | |
| − | *** [[Tiso_gene_4094]]
| + | |
| − | *** [[Tiso_gene_11148]]
| + | |
| − | *** [[Tiso_gene_1583]]
| + | |
| − | *** [[Tiso_gene_5502]]
| + | |
| − | *** [[Tiso_gene_15467]]
| + | |
| − | *** [[Tiso_gene_3418]]
| + | |
| − | *** [[Tiso_gene_4461]]
| + | |
| − | *** [[Tiso_gene_15885]]
| + | |
| − | *** [[Tiso_gene_7308]]
| + | |
| − | *** [[Tiso_gene_9666]]
| + | |
| − | *** [[Tiso_gene_7506]]
| + | |
| − | *** [[Tiso_gene_17363]]
| + | |
| − | *** [[Tiso_gene_6903]]
| + | |
| − | *** [[Tiso_gene_6901]]
| + | |
| − | *** [[Tiso_gene_3080]]
| + | |
| − | *** [[Tiso_gene_17423]]
| + | |
| − | *** [[Tiso_gene_17004]]
| + | |
| − | *** [[Tiso_gene_8637]]
| + | |
| − | *** [[Tiso_gene_8483]]
| + | |
| − | *** [[Tiso_gene_12298]]
| + | |
| − | *** [[Tiso_gene_17194]]
| + | |
| − | *** [[Tiso_gene_4585]]
| + | |
| − | *** [[Tiso_gene_12309]]
| + | |
| − | *** [[Tiso_gene_3419]]
| + | |
| − | *** [[Tiso_gene_11823]]
| + | |
| − | *** [[Tiso_gene_3081]]
| + | |
| − | *** [[Tiso_gene_1584]]
| + | |
| − | *** [[Tiso_gene_18752]]
| + | |
| − | *** [[Tiso_gene_2815]]
| + | |
| − | *** [[Tiso_gene_17517]]
| + | |
| − | *** [[Tiso_gene_1586]]
| + | |
| − | *** [[Tiso_gene_12029]]
| + | |
| − | *** [[Tiso_gene_9575]]
| + | |
| − | *** [[Tiso_gene_16166]]
| + | |
| − | *** [[Tiso_gene_20066]]
| + | |
| − | *** [[Tiso_gene_10888]]
| + | |
| − | *** [[Tiso_gene_15884]]
| + | |
| − | *** [[Tiso_gene_1426]]
| + | |
| − | *** [[Tiso_gene_15097]]
| + | |
| − | *** [[Tiso_gene_1591]]
| + | |
| − | *** [[Tiso_gene_9662]]
| + | |
| − | *** [[Tiso_gene_1585]]
| + | |
| − | *** [[Tiso_gene_5776]]
| + | |
| − | *** [[Tiso_gene_12348]]
| + | |
| − | *** [[Tiso_gene_4484]]
| + | |
| − | *** [[Tiso_gene_17195]]
| + | |
| − | *** [[Tiso_gene_3210]]
| + | |
| − | *** [[Tiso_gene_7955]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]] | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-15559]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-15560]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-15561]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-15563]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated: | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-15564]] | + | |
| − | ** 0 associated gene: | + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-16313]] | + | |
| − | ** 0 associated gene: | + | |
| − | ** 1 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[RXN-16314]]
| + | |
| − | ** 0 associated gene:
| + | |
| − | ** 1 reconstruction source(s) associated: | + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[UBIQUITIN--PROTEIN-LIGASE-RXN]] | + | |
| − | ** 88 associated gene(s): | + | |
| − | *** [[Tiso_gene_7506]]
| + | |
| − | *** [[Tiso_gene_17194]]
| + | |
| − | *** [[Tiso_gene_6901]]
| + | |
| − | *** [[Tiso_gene_2802]]
| + | |
| − | *** [[Tiso_gene_7308]]
| + | |
| − | *** [[Tiso_gene_9662]]
| + | |
| − | *** [[Tiso_gene_4585]]
| + | |
| − | *** [[Tiso_gene_3080]]
| + | |
| − | *** [[Tiso_gene_1426]]
| + | |
| − | *** [[Tiso_gene_8637]]
| + | |
| − | *** [[Tiso_gene_13243]]
| + | |
| − | *** [[Tiso_gene_2815]]
| + | |
| − | *** [[Tiso_gene_1427]]
| + | |
| − | *** [[Tiso_gene_2226]]
| + | |
| − | *** [[Tiso_gene_5622]]
| + | |
| − | *** [[Tiso_gene_16642]]
| + | |
| − | *** [[Tiso_gene_1592]]
| + | |
| − | *** [[Tiso_gene_18824]]
| + | |
| − | *** [[Tiso_gene_7779]]
| + | |
| − | *** [[Tiso_gene_18752]]
| + | |
| − | *** [[Tiso_gene_5776]]
| + | |
| − | *** [[Tiso_gene_17030]]
| + | |
| − | *** [[Tiso_gene_9666]]
| + | |
| − | *** [[Tiso_gene_17195]]
| + | |
| − | *** [[Tiso_gene_14181]]
| + | |
| − | *** [[Tiso_gene_6910]]
| + | |
| − | *** [[Tiso_gene_1588]]
| + | |
| − | *** [[Tiso_gene_8483]]
| + | |
| − | *** [[Tiso_gene_1587]]
| + | |
| − | *** [[Tiso_gene_17517]]
| + | |
| − | *** [[Tiso_gene_8801]]
| + | |
| − | *** [[Tiso_gene_1586]]
| + | |
| − | *** [[Tiso_gene_19647]]
| + | |
| − | *** [[Tiso_gene_11148]]
| + | |
| − | *** [[Tiso_gene_3211]]
| + | |
| − | *** [[Tiso_gene_4569]]
| + | |
| − | *** [[Tiso_gene_6902]]
| + | |
| − | *** [[Tiso_gene_1590]]
| + | |
| − | *** [[Tiso_gene_15624]]
| + | |
| − | *** [[Tiso_gene_11407]]
| + | |
| − | *** [[Tiso_gene_14567]]
| + | |
| − | *** [[Tiso_gene_15214]]
| + | |
| − | *** [[Tiso_gene_5502]]
| + | |
| − | *** [[Tiso_gene_17196]]
| + | |
| − | *** [[Tiso_gene_7719]]
| + | |
| − | *** [[Tiso_gene_10888]]
| + | |
| − | *** [[Tiso_gene_12627]]
| + | |
| − | *** [[Tiso_gene_1583]]
| + | |
| − | *** [[Tiso_gene_8636]]
| + | |
| − | *** [[Tiso_gene_7955]]
| + | |
| − | *** [[Tiso_gene_1593]]
| + | |
| − | *** [[Tiso_gene_8048]]
| + | |
| − | *** [[Tiso_gene_17004]]
| + | |
| − | *** [[Tiso_gene_12348]]
| + | |
| − | *** [[Tiso_gene_1335]]
| + | |
| − | *** [[Tiso_gene_1591]]
| + | |
| − | *** [[Tiso_gene_14360]]
| + | |
| − | *** [[Tiso_gene_12029]]
| + | |
| − | *** [[Tiso_gene_9575]]
| + | |
| − | *** [[Tiso_gene_4461]]
| + | |
| − | *** [[Tiso_gene_16166]]
| + | |
| − | *** [[Tiso_gene_14182]]
| + | |
| − | *** [[Tiso_gene_1584]]
| + | |
| − | *** [[Tiso_gene_558]]
| + | |
| − | *** [[Tiso_gene_13619]]
| + | |
| − | *** [[Tiso_gene_557]]
| + | |
| − | *** [[Tiso_gene_4966]]
| + | |
| − | *** [[Tiso_gene_3418]]
| + | |
| − | *** [[Tiso_gene_12309]]
| + | |
| − | *** [[Tiso_gene_3081]]
| + | |
| − | *** [[Tiso_gene_15097]]
| + | |
| − | *** [[Tiso_gene_10524]]
| + | |
| − | *** [[Tiso_gene_1589]]
| + | |
| − | *** [[Tiso_gene_16913]]
| + | |
| − | *** [[Tiso_gene_17112]]
| + | |
| − | *** [[Tiso_gene_1253]]
| + | |
| − | *** [[Tiso_gene_3210]]
| + | |
| − | *** [[Tiso_gene_1582]]
| + | |
| − | *** [[Tiso_gene_4484]]
| + | |
| − | *** [[Tiso_gene_4094]]
| + | |
| − | *** [[Tiso_gene_6903]]
| + | |
| − | *** [[Tiso_gene_3419]]
| + | |
| − | *** [[Tiso_gene_6946]]
| + | |
| − | *** [[Tiso_gene_14650]]
| + | |
| − | *** [[Tiso_gene_4460]]
| + | |
| − | *** [[Tiso_gene_17423]]
| + | |
| − | *** [[Tiso_gene_17363]]
| + | |
| − | *** [[Tiso_gene_1585]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]] | + | |
| − | == Reaction(s) not found ==
| + | |
| | == External links == | | == External links == |
| − | {{#set: taxonomic range=TAX-2759}} | + | * LIGAND-RXN: |
| − | {{#set: common name=protein ubiquitylation}} | + | ** [http://www.genome.jp/dbget-bin/www_bget?R05635 R05635] |
| − | {{#set: reaction found=9}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: total reaction=9}} | + | {{#set: common name=polypeptide_deformylase}} |
| − | {{#set: completion rate=100.0}} | + | {{#set: ec number=EC-3.5.1.88}} |
| | + | {{#set: gene associated=Tiso_gene_14998}} |
| | + | {{#set: in pathway=}} |
| | + | {{#set: reconstruction category=annotation}} |
| | + | {{#set: reconstruction source=annotation-in-silico_annotation}} |
| | + | {{#set: reconstruction tool=pathwaytools}} |
Genes have been associated with this reaction based on different elements listed below.
