Difference between revisions of "METHIONYL-TRNA-FORMYLTRANSFERASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=T...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONYL-TRNA-FORMYLTRANSFERASE-RXN METHIONYL-TRNA-FORMYLTRANSFERASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** dTDP-L-rhamnose biosynthesis I
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** methionyl-trna_formyltransferase
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** ribosomal_rna_small_subunit_methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.2.9 EC-2.1.2.9]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''3''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[DTDPDEHYRHAMREDUCT-RXN]]
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** 1 [[L-methionyl-tRNAfmet]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c] '''+''' 1 [[N-formyl-L-methionyl-tRNAfmet]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_4472]]
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** 1 an L-methionyl-[initiator tRNAmet][c] '''+''' 1 an N10-formyl-tetrahydrofolate[c] '''=>''' 1 H+[c] '''+''' 1 a tetrahydrofolate[c] '''+''' 1 an N-formyl-L-methionyl-[initiator tRNAmet][c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[DTDPGLUCDEHYDRAT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_13560]]
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*** [[Tiso_gene_12394]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_7329]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 4 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_13561]]
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*** [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[DTDPGLUCOSEPP-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_9355]]
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*** [[Tiso_gene_14704]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-synechocystis]]
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== Pathways  ==
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== Reaction(s) not found ==
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYDRHAMEPIM-RXN DTDPDEHYDRHAMEPIM-RXN]
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* LIGAND-RXN:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
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** [http://www.genome.jp/dbget-bin/www_bget?R03940 R03940]
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{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/P94463 P94463]
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{{#set: common name=dTDP-L-rhamnose biosynthesis I}}
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** [http://www.uniprot.org/uniprot/Q9PJ28 Q9PJ28]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P50932 P50932]
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/P47605 P47605]
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{{#set: completion rate=75.0}}
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** [http://www.uniprot.org/uniprot/P44787 P44787]
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** [http://www.uniprot.org/uniprot/P56461 P56461]
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** [http://www.uniprot.org/uniprot/Q9CEE9 Q9CEE9]
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** [http://www.uniprot.org/uniprot/O51091 O51091]
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** [http://www.uniprot.org/uniprot/Q9JWY9 Q9JWY9]
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** [http://www.uniprot.org/uniprot/P23882 P23882]
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** [http://www.uniprot.org/uniprot/P32785 P32785]
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** [http://www.uniprot.org/uniprot/P75235 P75235]
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** [http://www.uniprot.org/uniprot/Q55163 Q55163]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=methionyl-trna_formyltransferase}}
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{{#set: common name=ribosomal_rna_small_subunit_methyltransferase}}
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{{#set: ec number=EC-2.1.2.9}}
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{{#set: gene associated=Tiso_gene_13560|Tiso_gene_13561|Tiso_gene_9355}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:33, 21 March 2018

Reaction METHIONYL-TRNA-FORMYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methionyl-trna_formyltransferase
    • ribosomal_rna_small_subunit_methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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