Difference between revisions of "CENTFERM-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-122...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
 
* common name:
 
* common name:
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** aspartate-semialdehyde_dehydrogenase
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** pyruvate fermentation to butanoate
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.1.11 EC-1.2.1.11]
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* Synonym(s):
 
* Synonym(s):
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** central fermentation pathway
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** acetobutylicum fermentation
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** pyruvate fermentation to butyrate
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
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** 1 [[Pi]][c] '''+''' 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[L-BETA-ASPARTYL-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 phosphate[c] '''+''' 1 L-aspartate-semialdehyde[c] '''+''' 1 NADP+[c] '''<=>''' 1 L-aspartyl-4-phosphate[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_15327]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_17451]]
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Genes have been associated with this reaction based on different elements listed below.
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** 4 reconstruction source(s) associated:
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* [[Tiso_gene_18603]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-creinhardtii]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-11662]]
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** [[pantograph]]-[[athaliana]]
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** 7 associated gene(s):
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** [[pantograph]]-[[synechocystis]]
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*** [[Tiso_gene_16703]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_14027]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[Tiso_gene_14262]]
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== Pathways  ==
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*** [[Tiso_gene_14026]]
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* [[HOMOSERSYN-PWY]], L-homoserine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSERSYN-PWY HOMOSERSYN-PWY]
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*** [[Tiso_gene_18838]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_18839]]
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* [[PWY-7153]], grixazone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7153 PWY-7153]
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*** [[Tiso_gene_5857]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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** 5 reconstruction source(s) associated:
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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*** [[annotation-experimental_annotation]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
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*** [[annotation-in-silico_annotation]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-creinhardtii]]
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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*** [[orthology-esiliculosus]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-11667]]
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* [[PWY-6559]], spermidine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6559 PWY-6559]
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** 1 associated gene(s):
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** '''2''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_5857]]
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* [[PWY-6562]], norspermidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6562 PWY-6562]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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== Reaction(s) not found ==
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRATE-KINASE-RXN BUTYRATE-KINASE-RXN]
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* [[P101-PWY]], ectoine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=P101-PWY P101-PWY]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHATE-BUTYRYLTRANSFERASE-RXN PHOSPHATE-BUTYRYLTRANSFERASE-RXN]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24284 24284]
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{{#set: taxonomic range=TAX-1239}}
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* LIGAND-RXN:
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{{#set: common name=pyruvate fermentation to butanoate}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02291 R02291]
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{{#set: common name=central fermentation pathway|acetobutylicum fermentation|pyruvate fermentation to butyrate}}
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* UNIPROT:
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P10539 P10539]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P41394 P41394]
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{{#set: completion rate=43.0}}
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** [http://www.uniprot.org/uniprot/P44801 P44801]
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** [http://www.uniprot.org/uniprot/O67716 O67716]
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** [http://www.uniprot.org/uniprot/Q59291 Q59291]
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** [http://www.uniprot.org/uniprot/P57008 P57008]
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** [http://www.uniprot.org/uniprot/P0A9Q9 P0A9Q9]
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** [http://www.uniprot.org/uniprot/O25801 O25801]
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** [http://www.uniprot.org/uniprot/Q57658 Q57658]
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** [http://www.uniprot.org/uniprot/Q04797 Q04797]
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** [http://www.uniprot.org/uniprot/Q56732 Q56732]
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** [http://www.uniprot.org/uniprot/Q56734 Q56734]
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** [http://www.uniprot.org/uniprot/P13663 P13663]
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** [http://www.uniprot.org/uniprot/P23247 P23247]
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** [http://www.uniprot.org/uniprot/P41399 P41399]
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** [http://www.uniprot.org/uniprot/P41404 P41404]
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** [http://www.uniprot.org/uniprot/Q9JN40 Q9JN40]
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** [http://www.uniprot.org/uniprot/P26511 P26511]
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** [http://www.uniprot.org/uniprot/Q55512 Q55512]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=aspartate-semialdehyde_dehydrogenase}}
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{{#set: ec number=EC-1.2.1.11}}
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{{#set: gene associated=Tiso_gene_18603}}
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{{#set: in pathway=HOMOSERSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-2941|PWY-6559|PWY-6562|PWY-5097|P101-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:33, 21 March 2018

Pathway CENTFERM-PWY

  • taxonomic range:
  • common name:
    • pyruvate fermentation to butanoate
  • Synonym(s):
    • central fermentation pathway
    • acetobutylicum fermentation
    • pyruvate fermentation to butyrate

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CENTFERM-PWY&oldid=42359"