Difference between revisions of "PROTEIN-ARGININE-DEIMINASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17045 CPD-17045] == * smiles: ** C(O)C2(O)(NC(=O)C(O)(CC1(=CC=CC=C1))NC(=O)2) * inchi key:...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-17045 CPD-17045] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] ==
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* smiles:
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* direction:
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** C(O)C2(O)(NC(=O)C(O)(CC1(=CC=CC=C1))NC(=O)2)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=PXYPZMRMTKVYSM-VXGBXAGGSA-N
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* common name:
 
* common name:
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** 3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine
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** peptidylarginine_deiminase_(modular_protein)
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* molecular weight:
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* ec number:
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** 266.253   
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** [http://enzyme.expasy.org/EC/3.5.3.15 EC-3.5.3.15]
 
* Synonym(s):
 
* Synonym(s):
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** 3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-DKP
 
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** 3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)piperazine-2,5-dione
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-15680]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[Protein-L-Arginines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTEIN-L-CITRULLINE]][c] '''+''' 1 [[AMMONIUM]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a [protein]-L-arginine[c] '''+''' 1 H2O[c] '''=>''' 1 a [protein]-L-citrulline[c] '''+''' 1 ammonium[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_16344]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19262]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-4921]], protein citrullination: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4921 PWY-4921]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90659074 90659074]
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** [http://www.genome.jp/dbget-bin/www_bget?R02621 R02621]
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{{#set: smiles=C(O)C2(O)(NC(=O)C(O)(CC1(=CC=CC=C1))NC(=O)2)}}
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* UNIPROT:
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{{#set: inchi key=InChIKey=PXYPZMRMTKVYSM-VXGBXAGGSA-N}}
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** [http://www.uniprot.org/uniprot/Q08642 Q08642]
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{{#set: common name=3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine}}
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** [http://www.uniprot.org/uniprot/P20717 P20717]
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{{#set: molecular weight=266.253    }}
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** [http://www.uniprot.org/uniprot/P70708 P70708]
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{{#set: common name=3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-DKP|3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)piperazine-2,5-dione}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: consumed by=RXN-15680}}
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{{#set: common name=peptidylarginine_deiminase_(modular_protein)}}
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{{#set: ec number=EC-3.5.3.15}}
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{{#set: gene associated=Tiso_gene_16344|Tiso_gene_19262}}
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{{#set: in pathway=PWY-4921}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:26, 21 March 2018

Reaction PROTEIN-ARGININE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidylarginine_deiminase_(modular_protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4921, protein citrullination: PWY-4921
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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