Difference between revisions of "RXN-8042"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-840 RXN1G-840] == * direction: ** LEFT-TO-RIGHT * common name: ** cis-delta17-3-oxo-C36:1-[ac...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-840 RXN1G-840] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cis-delta17-3-oxo-C36:1-[acyl-carrier protein] synthase
+
** carotene_isomerase
 +
** carotenoid_isomerase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.M1 EC-2.3.1.M1]
+
** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[cis-delta15-gheddoyl-ACPs]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[cis-delta17-3-oxo-C36-ACPs]][c]
+
** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 a cis-delta15-C34:1-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a cis-delta17-3-oxo-C36:1-[acp][c]
+
** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14485]]
+
* Gene: [[Tiso_gene_13369]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15991]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_13367]]
−
* [[Tiso_gene_19302]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_917]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_916]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_15802]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_915]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
−
** '''86''' reactions found over '''182''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cis-delta17-3-oxo-C36:1-[acyl-carrier protein] synthase}}
+
{{#set: common name=carotene_isomerase}}
−
{{#set: ec number=EC-2.3.1.M1}}
+
{{#set: common name=carotenoid_isomerase}}
−
{{#set: gene associated=Tiso_gene_14485|Tiso_gene_15991|Tiso_gene_19302}}
+
{{#set: ec number=EC-5.2.1.13}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: gene associated=Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_915}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6475}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:34, 21 March 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8042&oldid=42453"