Difference between revisions of "Tiso gene 3446"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribof...")
(Created page with "Category:Gene == Gene Tiso_gene_3446 == * right end position: ** 12324 * transcription direction: ** POSITIVE * left end position: ** 11595 * centisome position: ** 69.518...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIOHBUTANONEPSYN-RXN DIOHBUTANONEPSYN-RXN] ==
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== Gene Tiso_gene_3446 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 12324
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* common name:
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* transcription direction:
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** riboflavin_biosynthesis_protein
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.99.12 EC-4.1.99.12]
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** 11595
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* centisome position:
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** 69.518555   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3-DEHYDROQUINATE-SYNTHASE-RXN]]
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** 1 [[RIBULOSE-5P]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[DIHYDROXY-BUTANONE-P]][c] '''+''' 1 [[FORMATE]][c]
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* With common name(s):
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** 1 D-ribulose 5-phosphate[c] '''=>''' 1 H+[c] '''+''' 1 1-deoxy-L-glycero-tetrulose 4-phosphate[c] '''+''' 1 formate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14275]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19932]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6164]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=12324}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18457 18457]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=11595}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07281 R07281]
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{{#set: centisome position=69.518555    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=3-DEHYDROQUINATE-SYNTHASE-RXN}}
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{{#set: common name=riboflavin_biosynthesis_protein}}
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{{#set: pathway associated=PWY-6164}}
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{{#set: ec number=EC-4.1.99.12}}
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{{#set: gene associated=Tiso_gene_14275|Tiso_gene_19932}}
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{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:34, 21 March 2018

Gene Tiso_gene_3446

  • right end position:
    • 12324
  • transcription direction:
    • POSITIVE
  • left end position:
    • 11595
  • centisome position:
    • 69.518555
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3446&oldid=42485"