Difference between revisions of "Tiso gene 10646"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [h...")
(Created page with "Category:Gene == Gene Tiso_gene_10646 == * right end position: ** 7641 * transcription direction: ** POSITIVE * left end position: ** 5934 * centisome position: ** 70.7439...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIB5PISOM-RXN RIB5PISOM-RXN] ==
+
== Gene Tiso_gene_10646 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 7641
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/5.3.1.6 EC-5.3.1.6]
+
** 5934
 +
* centisome position:
 +
** 70.74392   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[1.2.1.13-RXN]]
−
** 1 [[RIBOSE-5P]][c] '''<=>''' 1 [[RIBULOSE-5P]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 D-ribose 5-phosphate[c] '''<=>''' 1 D-ribulose 5-phosphate[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
* Reaction: [[GAPDHSYNEC-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_18217]]
+
*** Assignment: automated-name-match
−
** IN-SILICO_ANNOTATION
+
* Reaction: [[GAPOXNPHOSPHN-RXN]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
** Source: [[orthology-creinhardtii]]
−
* Category: [[manual]]
+
** Source: [[orthology-creinhardtii]]
−
** Source: [[manual-primary_network]]
+
* Reaction: [[TRIOSEPISOMERIZATION-RXN]]
−
* Category: [[annotation]]
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[annotation-in-silico_annotation]]
+
== Pathways associated ==
−
*** Tool: [[pathwaytools]]
+
* [[PWY-1042]]
 +
* [[P341-PWY]]
 +
* [[PWY66-399]]
 +
* [[PWY66-373]]
 +
* [[GLUCONEO-PWY]]
 +
* [[GLYCOLYSIS]]
 +
* [[PWY-6901]]
 +
* [[SUCSYN-PWY]]
 +
* [[P124-PWY]]
 +
* [[PWY-6142]]
 +
* [[CALVIN-PWY]]
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
* [[PWY-5484]]
 +
* [[P185-PWY]]
 +
* [[P122-PWY]]
 +
* [[PWY-7003]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=7641}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14657 14657]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=5934}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01056 R01056]
+
{{#set: centisome position=70.74392    }}
−
* UNIPROT:
+
{{#set: reaction associated=1.2.1.13-RXN|GAPDHSYNEC-RXN|GAPOXNPHOSPHN-RXN|TRIOSEPISOMERIZATION-RXN}}
−
** [http://www.uniprot.org/uniprot/P0A7Z0 P0A7Z0]
+
{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-399|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|SUCSYN-PWY|P124-PWY|PWY-6142|CALVIN-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
−
** [http://www.uniprot.org/uniprot/Q9CDI7 Q9CDI7]
+
−
** [http://www.uniprot.org/uniprot/P44725 P44725]
+
−
** [http://www.uniprot.org/uniprot/Q58998 Q58998]
+
−
** [http://www.uniprot.org/uniprot/Q9JTM5 Q9JTM5]
+
−
** [http://www.uniprot.org/uniprot/Q9PP08 Q9PP08]
+
−
** [http://www.uniprot.org/uniprot/P37351 P37351]
+
−
** [http://www.uniprot.org/uniprot/P74234 P74234]
+
−
** [http://www.uniprot.org/uniprot/Q55766 Q55766]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-5.3.1.6}}
+
−
{{#set: gene associated=Tiso_gene_18217}}
+
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:35, 21 March 2018

Gene Tiso_gene_10646

  • right end position:
    • 7641
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5934
  • centisome position:
    • 70.74392
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10646&oldid=42524"