Difference between revisions of "H2Othu"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINESYN-RXN GLUTAMINESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamine_chl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Othu H2Othu] == * direction: ** REVERSIBLE * common name: ** H2O transport by passive diffusion,...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINESYN-RXN GLUTAMINESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2Othu H2Othu] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** glutamine_chloroplasticmitochondrial
+
** H2O transport by passive diffusion, Thylakoid Lumen
−
** glutamine_synthase
+
−
** glutamine_synthetase
+
−
** isochorismatase_hydrolase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.3.1.2 EC-6.3.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
−
** type I glutamate--ammonia ligase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1.0 [[WATER]][u] '''<=>''' 1.0 [[WATER]][h]
 
* With common name(s):
 
* With common name(s):
−
** 1 ammonium[c] '''+''' 1 ATP[c] '''+''' 1 L-glutamate[c] '''=>''' 1 phosphate[c] '''+''' 1 L-glutamine[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1.0 H2O[u] '''<=>''' 1.0 H2O[h]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13820]]
+
* Gene: [[Tiso_gene_11818]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_6647]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13754]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_14842]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLNSYN-PWY]], L-glutamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLNSYN-PWY GLNSYN-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6963]], ammonia assimilation cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16169 16169]
+
{{#set: common name=H2O transport by passive diffusion, Thylakoid Lumen}}
−
* LIGAND-RXN:
+
{{#set: gene associated=Tiso_gene_11818}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00253 R00253]
+
{{#set: in pathway=}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P15103 P15103]
+
{{#set: reconstruction source=orthology-creinhardtii}}
−
** [http://www.uniprot.org/uniprot/P15124 P15124]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P15623 P15623]
+
−
** [http://www.uniprot.org/uniprot/P21154 P21154]
+
−
** [http://www.uniprot.org/uniprot/P45627 P45627]
+
−
** [http://www.uniprot.org/uniprot/Q59982 Q59982]
+
−
** [http://www.uniprot.org/uniprot/Q7M314 Q7M314]
+
−
** [http://www.uniprot.org/uniprot/Q60182 Q60182]
+
−
** [http://www.uniprot.org/uniprot/P04078 P04078]
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−
** [http://www.uniprot.org/uniprot/P00964 P00964]
+
−
** [http://www.uniprot.org/uniprot/P22248 P22248]
+
−
** [http://www.uniprot.org/uniprot/P07804 P07804]
+
−
** [http://www.uniprot.org/uniprot/P13564 P13564]
+
−
** [http://www.uniprot.org/uniprot/P12425 P12425]
+
−
** [http://www.uniprot.org/uniprot/P19064 P19064]
+
−
** [http://www.uniprot.org/uniprot/P16580 P16580]
+
−
** [http://www.uniprot.org/uniprot/P10656 P10656]
+
−
** [http://www.uniprot.org/uniprot/P11600 P11600]
+
−
** [http://www.uniprot.org/uniprot/P0A1P6 P0A1P6]
+
−
** [http://www.uniprot.org/uniprot/P0A9C5 P0A9C5]
+
−
** [http://www.uniprot.org/uniprot/P00965 P00965]
+
−
** [http://www.uniprot.org/uniprot/P04771 P04771]
+
−
** [http://www.uniprot.org/uniprot/P04770 P04770]
+
−
** [http://www.uniprot.org/uniprot/P15102 P15102]
+
−
** [http://www.uniprot.org/uniprot/P10583 P10583]
+
−
** [http://www.uniprot.org/uniprot/P23712 P23712]
+
−
** [http://www.uniprot.org/uniprot/P15105 P15105]
+
−
** [http://www.uniprot.org/uniprot/P08282 P08282]
+
−
** [http://www.uniprot.org/uniprot/P08281 P08281]
+
−
** [http://www.uniprot.org/uniprot/P07694 P07694]
+
−
** [http://www.uniprot.org/uniprot/P09606 P09606]
+
−
** [http://www.uniprot.org/uniprot/P14654 P14654]
+
−
** [http://www.uniprot.org/uniprot/P14655 P14655]
+
−
** [http://www.uniprot.org/uniprot/P14656 P14656]
+
−
** [http://www.uniprot.org/uniprot/P22878 P22878]
+
−
** [http://www.uniprot.org/uniprot/P19432 P19432]
+
−
** [http://www.uniprot.org/uniprot/P15106 P15106]
+
−
** [http://www.uniprot.org/uniprot/P19904 P19904]
+
−
** [http://www.uniprot.org/uniprot/P14636 P14636]
+
−
** [http://www.uniprot.org/uniprot/P04772 P04772]
+
−
** [http://www.uniprot.org/uniprot/P09826 P09826]
+
−
** [http://www.uniprot.org/uniprot/P05457 P05457]
+
−
** [http://www.uniprot.org/uniprot/Q9JSU6 Q9JSU6]
+
−
** [http://www.uniprot.org/uniprot/Q9PPK8 Q9PPK8]
+
−
** [http://www.uniprot.org/uniprot/O66514 O66514]
+
−
** [http://www.uniprot.org/uniprot/Q8X7G0 Q8X7G0]
+
−
** [http://www.uniprot.org/uniprot/Q9CDL9 Q9CDL9]
+
−
** [http://www.uniprot.org/uniprot/Q05650 Q05650]
+
−
** [http://www.uniprot.org/uniprot/P43794 P43794]
+
−
** [http://www.uniprot.org/uniprot/P31592 P31592]
+
−
** [http://www.uniprot.org/uniprot/Q27747 Q27747]
+
−
** [http://www.uniprot.org/uniprot/P12424 P12424]
+
−
** [http://www.uniprot.org/uniprot/Q04831 Q04831]
+
−
** [http://www.uniprot.org/uniprot/P24099 P24099]
+
−
** [http://www.uniprot.org/uniprot/O04998 O04998]
+
−
** [http://www.uniprot.org/uniprot/O04999 O04999]
+
−
** [http://www.uniprot.org/uniprot/P20479 P20479]
+
−
** [http://www.uniprot.org/uniprot/O75014 O75014]
+
−
** [http://www.uniprot.org/uniprot/P23794 P23794]
+
−
** [http://www.uniprot.org/uniprot/Q43127 Q43127]
+
−
** [http://www.uniprot.org/uniprot/Q9FHR0 Q9FHR0]
+
−
** [http://www.uniprot.org/uniprot/Q9C8C7 Q9C8C7]
+
−
** [http://www.uniprot.org/uniprot/P28786 P28786]
+
−
** [http://www.uniprot.org/uniprot/Q02154 Q02154]
+
−
** [http://www.uniprot.org/uniprot/Q05542 Q05542]
+
−
** [http://www.uniprot.org/uniprot/Q42624 Q42624]
+
−
** [http://www.uniprot.org/uniprot/P43518 P43518]
+
−
** [http://www.uniprot.org/uniprot/P52783 P52783]
+
−
** [http://www.uniprot.org/uniprot/Q43759 Q43759]
+
−
** [http://www.uniprot.org/uniprot/P38559 P38559]
+
−
** [http://www.uniprot.org/uniprot/P38560 P38560]
+
−
** [http://www.uniprot.org/uniprot/P38561 P38561]
+
−
** [http://www.uniprot.org/uniprot/P38562 P38562]
+
−
** [http://www.uniprot.org/uniprot/P38563 P38563]
+
−
** [http://www.uniprot.org/uniprot/P25462 P25462]
+
−
** [http://www.uniprot.org/uniprot/Q42625 Q42625]
+
−
** [http://www.uniprot.org/uniprot/P46410 P46410]
+
−
** [http://www.uniprot.org/uniprot/Q42802 Q42802]
+
−
** [http://www.uniprot.org/uniprot/Q42623 Q42623]
+
−
** [http://www.uniprot.org/uniprot/Q53045 Q53045]
+
−
** [http://www.uniprot.org/uniprot/P32288 P32288]
+
−
** [http://www.uniprot.org/uniprot/Q43066 Q43066]
+
−
** [http://www.uniprot.org/uniprot/Q59195 Q59195]
+
−
** [http://www.uniprot.org/uniprot/P51118 P51118]
+
−
** [http://www.uniprot.org/uniprot/P51119 P51119]
+
−
** [http://www.uniprot.org/uniprot/Q42950 Q42950]
+
−
** [http://www.uniprot.org/uniprot/Q42951 Q42951]
+
−
** [http://www.uniprot.org/uniprot/Q07939 Q07939]
+
−
** [http://www.uniprot.org/uniprot/Q43760 Q43760]
+
−
** [http://www.uniprot.org/uniprot/Q42688 Q42688]
+
−
** [http://www.uniprot.org/uniprot/Q42689 Q42689]
+
−
** [http://www.uniprot.org/uniprot/O22504 O22504]
+
−
** [http://www.uniprot.org/uniprot/O22505 O22505]
+
−
** [http://www.uniprot.org/uniprot/O22506 O22506]
+
−
** [http://www.uniprot.org/uniprot/Q59972 Q59972]
+
−
** [http://www.uniprot.org/uniprot/Q9UWN1 Q9UWN1]
+
−
** [http://www.uniprot.org/uniprot/Q9RDW7 Q9RDW7]
+
−
** [http://www.uniprot.org/uniprot/P43386 P43386]
+
−
** [http://www.uniprot.org/uniprot/P0A040 P0A040]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutamine_chloroplasticmitochondrial}}
+
−
{{#set: common name=glutamine_synthase}}
+
−
{{#set: common name=glutamine_synthetase}}
+
−
{{#set: common name=isochorismatase_hydrolase}}
+
−
{{#set: ec number=EC-6.3.1.2}}
+
−
{{#set: common name=type I glutamate--ammonia ligase}}
+
−
{{#set: gene associated=Tiso_gene_13820|Tiso_gene_6647|Tiso_gene_13754|Tiso_gene_14842}}
+
−
{{#set: in pathway=GLNSYN-PWY|PWY-5675|PWY-381|PWY-6549|PWY-6964|PWY490-3|PWY-6963}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:35, 21 March 2018

Reaction H2Othu

  • direction:
    • REVERSIBLE
  • common name:
    • H2O transport by passive diffusion, Thylakoid Lumen
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 H2O[u] <=> 1.0 H2O[h]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=H2Othu&oldid=42571"