Difference between revisions of "PWY-7184"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_phos...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTCYCLOHYD-RXN HISTCYCLOHYD-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** probable_phosphoribosyl-amp_cyclohydrolase
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** pyrimidine deoxyribonucleotides de novo biosynthesis I
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** phosphoribosyl-amp_cyclohydrolase
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−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.5.4.19 EC-3.5.4.19]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''9''' reactions found over '''9''' reactions in the full pathway
−
** 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c]
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* [[CDPREDUCT-RXN]]
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* With common name(s):
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** 4 associated gene(s):
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** 1 1-(5-phospho-β-D-ribosyl)-AMP[c] '''+''' 1 H2O[c] '''=>''' 1 1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide[c]
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*** [[Tiso_gene_10617]]
−
 
+
*** [[Tiso_gene_9916]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_9915]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_10138]]
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* [[Tiso_gene_5047]]
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** 6 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
−
* [[Tiso_gene_11297]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[synechocystis]]
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* [[DCDPKIN-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 6 associated gene(s):
−
** [[pantograph]]-[[creinhardtii]]
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*** [[Tiso_gene_9290]]
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== Pathways  ==
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*** [[Tiso_gene_17271]]
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* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
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*** [[Tiso_gene_17272]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
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*** [[Tiso_gene_195]]
−
== Reconstruction information  ==
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*** [[Tiso_gene_18224]]
−
* [[orthology]]:
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*** [[Tiso_gene_16529]]
−
** [[pantograph]]:
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** 6 reconstruction source(s) associated:
−
*** [[creinhardtii]]
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*** [[annotation-experimental_annotation]]
−
*** [[synechocystis]]
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*** [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
−
*** [[athaliana]]
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*** [[orthology-athaliana]]
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* [[manual]]:
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*** [[orthology-synechocystis]]
−
** [[primary_network]]
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*** [[manual-primary_network]]
−
* [[annotation]]:
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* [[DTDPKIN-RXN]]
−
** [[pathwaytools]]:
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** 6 associated gene(s):
−
*** [[in-silico_annotation]]
+
*** [[Tiso_gene_18224]]
 +
*** [[Tiso_gene_16529]]
 +
*** [[Tiso_gene_195]]
 +
*** [[Tiso_gene_17271]]
 +
*** [[Tiso_gene_17272]]
 +
*** [[Tiso_gene_9290]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[DTMPKI-RXN]]
 +
** 1 associated gene(s):
 +
*** [[Tiso_gene_3755]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
*** [[annotation-experimental_annotation]]
 +
* [[DUDPKIN-RXN]]
 +
** 6 associated gene(s):
 +
*** [[Tiso_gene_17272]]
 +
*** [[Tiso_gene_16529]]
 +
*** [[Tiso_gene_18224]]
 +
*** [[Tiso_gene_195]]
 +
*** [[Tiso_gene_9290]]
 +
*** [[Tiso_gene_17271]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[DUTP-PYROP-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_18793]]
 +
*** [[Tiso_gene_18792]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[manual-primary_network]]
 +
* [[RXN-12195]]
 +
** 101 associated gene(s):
 +
*** [[Tiso_gene_1960]]
 +
*** [[Tiso_gene_11098]]
 +
*** [[Tiso_gene_12899]]
 +
*** [[Tiso_gene_2924]]
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*** [[Tiso_gene_14226]]
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*** [[Tiso_gene_674]]
 +
*** [[Tiso_gene_8601]]
 +
*** [[Tiso_gene_8584]]
 +
*** [[Tiso_gene_9959]]
 +
*** [[Tiso_gene_2929]]
 +
*** [[Tiso_gene_9423]]
 +
*** [[Tiso_gene_873]]
 +
*** [[Tiso_gene_8763]]
 +
*** [[Tiso_gene_9004]]
 +
*** [[Tiso_gene_14816]]
 +
*** [[Tiso_gene_5529]]
 +
*** [[Tiso_gene_4192]]
 +
*** [[Tiso_gene_8859]]
 +
*** [[Tiso_gene_14227]]
 +
*** [[Tiso_gene_9234]]
 +
*** [[Tiso_gene_38]]
 +
*** [[Tiso_gene_2889]]
 +
*** [[Tiso_gene_4194]]
 +
*** [[Tiso_gene_15043]]
 +
*** [[Tiso_gene_537]]
 +
*** [[Tiso_gene_4026]]
 +
*** [[Tiso_gene_14646]]
 +
*** [[Tiso_gene_195]]
 +
*** [[Tiso_gene_3653]]
 +
*** [[Tiso_gene_1444]]
 +
*** [[Tiso_gene_8949]]
 +
*** [[Tiso_gene_17616]]
 +
*** [[Tiso_gene_546]]
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*** [[Tiso_gene_13738]]
 +
*** [[Tiso_gene_538]]
 +
*** [[Tiso_gene_2449]]
 +
*** [[Tiso_gene_1959]]
 +
*** [[Tiso_gene_7387]]
 +
*** [[Tiso_gene_2447]]
 +
*** [[Tiso_gene_20353]]
 +
*** [[Tiso_gene_5166]]
 +
*** [[Tiso_gene_4596]]
 +
*** [[Tiso_gene_2448]]
 +
*** [[Tiso_gene_5525]]
 +
*** [[Tiso_gene_12148]]
 +
*** [[Tiso_gene_20327]]
 +
*** [[Tiso_gene_11012]]
 +
*** [[Tiso_gene_2176]]
 +
*** [[Tiso_gene_13325]]
 +
*** [[Tiso_gene_13268]]
 +
*** [[Tiso_gene_12149]]
 +
*** [[Tiso_gene_2451]]
 +
*** [[Tiso_gene_6614]]
 +
*** [[Tiso_gene_2897]]
 +
*** [[Tiso_gene_4436]]
 +
*** [[Tiso_gene_623]]
 +
*** [[Tiso_gene_9926]]
 +
*** [[Tiso_gene_6181]]
 +
*** [[Tiso_gene_16478]]
 +
*** [[Tiso_gene_6180]]
 +
*** [[Tiso_gene_1984]]
 +
*** [[Tiso_gene_2452]]
 +
*** [[Tiso_gene_15465]]
 +
*** [[Tiso_gene_4092]]
 +
*** [[Tiso_gene_7745]]
 +
*** [[Tiso_gene_829]]
 +
*** [[Tiso_gene_250]]
 +
*** [[Tiso_gene_1541]]
 +
*** [[Tiso_gene_199]]
 +
*** [[Tiso_gene_7123]]
 +
*** [[Tiso_gene_10282]]
 +
*** [[Tiso_gene_9114]]
 +
*** [[Tiso_gene_2450]]
 +
*** [[Tiso_gene_14474]]
 +
*** [[Tiso_gene_8461]]
 +
*** [[Tiso_gene_4437]]
 +
*** [[Tiso_gene_4726]]
 +
*** [[Tiso_gene_9659]]
 +
*** [[Tiso_gene_8950]]
 +
*** [[Tiso_gene_2068]]
 +
*** [[Tiso_gene_9243]]
 +
*** [[Tiso_gene_13264]]
 +
*** [[Tiso_gene_4330]]
 +
*** [[Tiso_gene_13681]]
 +
*** [[Tiso_gene_1610]]
 +
*** [[Tiso_gene_13653]]
 +
*** [[Tiso_gene_17449]]
 +
*** [[Tiso_gene_10221]]
 +
*** [[Tiso_gene_19098]]
 +
*** [[Tiso_gene_4155]]
 +
*** [[Tiso_gene_8164]]
 +
*** [[Tiso_gene_19350]]
 +
*** [[Tiso_gene_2631]]
 +
*** [[Tiso_gene_17751]]
 +
*** [[Tiso_gene_1611]]
 +
*** [[Tiso_gene_3287]]
 +
*** [[Tiso_gene_7734]]
 +
*** [[Tiso_gene_572]]
 +
*** [[Tiso_gene_1291]]
 +
*** [[Tiso_gene_14239]]
 +
*** [[Tiso_gene_8860]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
* [[THYMIDYLATESYN-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_7708]]
 +
*** [[Tiso_gene_18478]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[manual-primary_network]]
 +
*** [[annotation-in-silico_annotation]]
 +
* [[UDPREDUCT-RXN]]
 +
** 4 associated gene(s):
 +
*** [[Tiso_gene_9915]]
 +
*** [[Tiso_gene_9916]]
 +
*** [[Tiso_gene_10138]]
 +
*** [[Tiso_gene_10617]]
 +
** 6 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20049 20049]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7184 PWY-7184]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2157}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04037 R04037]
+
{{#set: taxonomic range=TAX-2759}}
−
* UNIPROT:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.uniprot.org/uniprot/P44434 P44434]
+
{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis I}}
−
** [http://www.uniprot.org/uniprot/Q9JVH6 Q9JVH6]
+
{{#set: reaction found=9}}
−
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
+
{{#set: total reaction=9}}
−
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
+
{{#set: completion rate=100.0}}
−
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
+
−
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
+
−
** [http://www.uniprot.org/uniprot/Q58825 Q58825]
+
−
** [http://www.uniprot.org/uniprot/O28329 O28329]
+
−
** [http://www.uniprot.org/uniprot/O34912 O34912]
+
−
** [http://www.uniprot.org/uniprot/P0A5B3 P0A5B3]
+
−
** [http://www.uniprot.org/uniprot/Q9HUB7 Q9HUB7]
+
−
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
+
−
** [http://www.uniprot.org/uniprot/Q9K0H5 Q9K0H5]
+
−
** [http://www.uniprot.org/uniprot/O67780 O67780]
+
−
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
+
−
** [http://www.uniprot.org/uniprot/Q50837 Q50837]
+
−
** [http://www.uniprot.org/uniprot/Q53158 Q53158]
+
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
+
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
+
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
+
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
+
−
** [http://www.uniprot.org/uniprot/O59667 O59667]
+
−
** [http://www.uniprot.org/uniprot/Q9X7C3 Q9X7C3]
+
−
** [http://www.uniprot.org/uniprot/O82768 O82768]
+
−
** [http://www.uniprot.org/uniprot/P10367 P10367]
+
−
** [http://www.uniprot.org/uniprot/P06989 P06989]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=probable_phosphoribosyl-amp_cyclohydrolase}}
+
−
{{#set: common name=phosphoribosyl-amp_cyclohydrolase}}
+
−
{{#set: ec number=EC-3.5.4.19}}
+
−
{{#set: gene associated=Tiso_gene_5047|Tiso_gene_11297}}
+
−
{{#set: in pathway=HISTSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 19:26, 21 March 2018

Pathway PWY-7184

  • taxonomic range:
  • common name:
    • pyrimidine deoxyribonucleotides de novo biosynthesis I
  • Synonym(s):

Reaction(s) found

9 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7184&oldid=41618"