Difference between revisions of "Tiso gene 6562"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12252 RXN-12252] == * direction: ** LEFT-TO-RIGHT * common name: ** para-nitrobenzyl_esterase *...")
(Created page with "Category:Gene == Gene Tiso_gene_6562 == * right end position: ** 2419 * transcription direction: ** POSITIVE * left end position: ** 1810 * centisome position: ** 15.01950...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12252 RXN-12252] ==
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== Gene Tiso_gene_6562 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2419
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* common name:
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* transcription direction:
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** para-nitrobenzyl_esterase
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** POSITIVE
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** protein_chloroplastic
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* left end position:
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** serine_esterase
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** 1810
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** alpha_beta_hydrolase_fold_protein
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* centisome position:
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** sialate_o-acetylesterase-like_protein
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** 15.019500   
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** ORF
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** lysophospholipase
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** alpha_beta_hydrolase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.2.1.31-RXN]]
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** 1 [[CPD-13174]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13172]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-173]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 salicyl-6-hydroxy-2-cyclohexene-on-oyl[c] '''+''' 1 H2O[c] '''=>''' 1 6-hydroxy-2-cyclohexen-one-carboxylate[c] '''+''' 1 H+[c] '''+''' 1 salicyl alcohol[c]
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* Reaction: [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ALCOHOL-DEHYDROG-RXN]]
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* [[Tiso_gene_10066]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[ALLYSINE-DEHYDROG-RXN]]
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* [[Tiso_gene_4606]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[L-IDITOL-2-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_12686]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
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* [[Tiso_gene_16518]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_9429]]
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* Reaction: [[RXN-10781]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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* [[Tiso_gene_1537]]
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* Reaction: [[RXN-10855]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-10911]]
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* [[Tiso_gene_1922]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-10915]]
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* [[Tiso_gene_1538]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_11351]]
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* Reaction: [[RXN-12448]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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* [[Tiso_gene_4650]]
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* Reaction: [[RXN-12560]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-13198]]
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* [[Tiso_gene_2556]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-13279]]
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* [[Tiso_gene_17029]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-5424]]
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* [[Tiso_gene_19778]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-5901]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[RXN-7644]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Category: [[annotation]]
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* Reaction: [[RXN-7657]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7693]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7694]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7700]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-7706]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN3O-4113]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN66-478]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY66-21]]
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* [[PWY-6587]]
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* [[PWY-7111]]
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* [[FERMENTATION-PWY]]
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* [[PWY-5676]]
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* [[PWY-5082]]
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* [[PWY-7118]]
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* [[PWY-7013]]
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* [[PWY-3162]]
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* [[PWY-5751]]
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* [[PWY-6342]]
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* [[PWY1-3]]
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* [[P161-PWY]]
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* [[ETOH-ACETYLCOA-ANA-PWY]]
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* [[PWY-6871]]
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* [[PWY-7396]]
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* [[PWY-5057]]
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* [[PWY-5741]]
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* [[PWY-5076]]
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* [[PWY-6333]]
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* [[PWY-5486]]
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* [[PWY-5079]]
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* [[PWY-5078]]
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* [[PWY-6313]]
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* [[PWY66-425]]
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* [[PWY-5480]]
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* [[PWY3O-4108]]
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* [[PWY-7216]]
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* [[PWY-6802]]
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* [[LYSINE-DEG1-PWY]]
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* [[P122-PWY]]
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* [[PWY66-389]]
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* [[PWY4LZ-257]]
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* [[PWY-4101]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=2419}}
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{{#set: common name=para-nitrobenzyl_esterase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=protein_chloroplastic}}
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{{#set: left end position=1810}}
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{{#set: common name=serine_esterase}}
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{{#set: centisome position=15.019500    }}
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{{#set: common name=alpha_beta_hydrolase_fold_protein}}
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{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN3O-4113|RXN66-478}}
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{{#set: common name=sialate_o-acetylesterase-like_protein}}
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{{#set: pathway associated=PWY66-21|PWY-6587|PWY-7111|FERMENTATION-PWY|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
−
{{#set: common name=ORF}}
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{{#set: common name=lysophospholipase}}
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{{#set: common name=alpha_beta_hydrolase}}
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{{#set: ec number=EC-3.1.1.1}}
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{{#set: gene associated=Tiso_gene_10066|Tiso_gene_4606|Tiso_gene_12686|Tiso_gene_16518|Tiso_gene_9429|Tiso_gene_1537|Tiso_gene_1922|Tiso_gene_1538|Tiso_gene_11351|Tiso_gene_4650|Tiso_gene_2556|Tiso_gene_17029|Tiso_gene_19778}}
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−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:37, 21 March 2018

Gene Tiso_gene_6562

  • right end position:
    • 2419
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1810
  • centisome position:
    • 15.019500
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6562&oldid=42789"