Difference between revisions of "ExchangeSeed OXYGEN-MOLECULE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_OXYGEN-MOLECULE ExchangeSeed_OXYGEN-MOLECULE] == * direction: ** REVERSIBLE * Synonym(...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ExchangeSeed_OXYGEN-MOLECULE ExchangeSeed_OXYGEN-MOLECULE] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
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** REVERSIBLE
−
* common name:
+
−
** ORF
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−
** thiamine_monophosphate_synthase
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−
* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
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* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
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** 1.0 [[OXYGEN-MOLECULE]][C-BOUNDARY] '''<=>''' 1.0 [[OXYGEN-MOLECULE]][e]
 
* With common name(s):
 
* With common name(s):
−
** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 H+[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c]
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** 1.0 oxygen[C-BOUNDARY] '''<=>''' 1.0 oxygen[e]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_10320]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
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* [[Tiso_gene_2159]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_2160]]
 
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** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-athaliana]]
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** Source: [[manual-import_from_medium]]
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*** Tool: [[pantograph]]
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*** Comment: [[added to manage seeds from boundary to extracellular compartment]]
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** Source: [[orthology-esiliculosus]]
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−
*** Tool: [[pantograph]]
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−
* Category: [[annotation]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=REVERSIBLE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
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{{#set: in pathway=}}
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* LIGAND-RXN:
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{{#set: reconstruction category=manual}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
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{{#set: reconstruction source=manual-import_from_medium}}
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* UNIPROT:
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{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
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** [http://www.uniprot.org/uniprot/P41835 P41835]
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** [http://www.uniprot.org/uniprot/P71350 P71350]
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** [http://www.uniprot.org/uniprot/O25514 O25514]
+
−
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
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−
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
+
−
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
+
−
** [http://www.uniprot.org/uniprot/P30137 P30137]
+
−
** [http://www.uniprot.org/uniprot/P39594 P39594]
+
−
** [http://www.uniprot.org/uniprot/P40386 P40386]
+
−
** [http://www.uniprot.org/uniprot/P72965 P72965]
+
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** [http://www.uniprot.org/uniprot/O48881 O48881]
+
−
** [http://www.uniprot.org/uniprot/O34294 O34294]
+
−
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
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−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=ORF}}
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−
{{#set: common name=thiamine_monophosphate_synthase}}
+
−
{{#set: ec number=EC-2.5.1.3}}
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−
{{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}}
+
−
{{#set: in pathway=PWY-6897|PWY-6908|PWY-7356|PWY-7357}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:37, 21 March 2018

Reaction ExchangeSeed_OXYGEN-MOLECULE

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links

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