Difference between revisions of "RXN-5286"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-48...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7517 PWY-7517] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4890 TAX-4890]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.3.1.75 EC-1.3.1.75]
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** brassicicene C biosynthesis
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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** 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_16284]]
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** 1 3,8-divinyl chlorophyllide a[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 chlorophyllide a[c] '''+''' 1 NADP+[c]
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*** [[Tiso_gene_7305]]
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** 6 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13868]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-athaliana]]
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== Pathways  ==
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*** [[orthology-synechocystis]]
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* [[PWY-5526]], bacteriochlorophyll a biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5526 PWY-5526]
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*** [[manual-primary_network]]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-7758]], bacteriochlorophyll d biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7758 PWY-7758]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10632 RXN-10632]
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** '''1''' reactions found over '''14''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15591 RXN-15591]
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* [[PWY-7759]], bacteriochlorophyll c biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7759 PWY-7759]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15592 RXN-15592]
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** '''1''' reactions found over '''18''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15593 RXN-15593]
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* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15594 RXN-15594]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15595 RXN-15595]
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* [[PWY-5086]], chlorophyll a biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5086 PWY-5086]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7760]], bacteriochlorophyll e biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7760 PWY-7760]
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** '''1''' reactions found over '''26''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4890}}
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14449 14449]
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{{#set: common name=brassicicene C biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06272 R06272]
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{{#set: total reaction=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=14.0}}
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{{#set: ec number=EC-1.3.1.75}}
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{{#set: gene associated=Tiso_gene_13868}}
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{{#set: in pathway=PWY-5526|PWY-7758|PWY-7759|PWY-5064|PWY-5086|PWY-7760}}
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{{#set: reconstruction category=orthology|manual}}
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{{#set: reconstruction source=manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:38, 21 March 2018

Reaction RXN-5286

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5526, bacteriochlorophyll a biosynthesis: PWY-5526
    • 1 reactions found over 13 reactions in the full pathway
  • PWY-7758, bacteriochlorophyll d biosynthesis: PWY-7758
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-7759, bacteriochlorophyll c biosynthesis: PWY-7759
    • 1 reactions found over 18 reactions in the full pathway
  • PWY-5064, chlorophyll a biosynthesis II: PWY-5064
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5086, chlorophyll a biosynthesis I: PWY-5086
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7760, bacteriochlorophyll e biosynthesis: PWY-7760
    • 1 reactions found over 26 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-5286&oldid=42909"