Difference between revisions of "XMPXAN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6027 PWY-6027] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4071 TAX-40...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=XMPXAN-RXN XMPXAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_cytosolic_imp-gm...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6027 PWY-6027] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=XMPXAN-RXN XMPXAN-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4071 TAX-4071]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** capsiconiate biosynthesis
+
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** 5_deoxy_cytosolic_type_c_protein
 +
** ORF
 +
** 5_-nucleotidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''1''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
−
* [[RXN-1106]]
+
** 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[XANTHOSINE]][c] '''+''' 1 [[Pi]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_15272]]
+
** 1 XMP[c] '''+''' 1 H2O[c] '''=>''' 1 xanthosine[c] '''+''' 1 phosphate[c]
−
*** [[Tiso_gene_11016]]
+
 
−
*** [[Tiso_gene_9504]]
+
== Genes associated with this reaction  ==
−
** 2 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_14435]]
−
*** [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
== Reaction(s) not found ==
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-2602 RXN-2602]
+
* Gene: [[Tiso_gene_6640]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8926 RXN-8926]
+
** Source: [[orthology-esiliculosus]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9719 RXN-9719]
+
* Gene: [[Tiso_gene_14434]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13929]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5911]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6988]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways  ==
 +
* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-4071}}
+
* RHEA:
−
{{#set: common name=capsiconiate biosynthesis}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28530 28530]
−
{{#set: reaction found=1}}
+
* LIGAND-RXN:
−
{{#set: total reaction=4}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02719 R02719]
−
{{#set: completion rate=25.0}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
 +
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=5_-nucleotidase}}
 +
{{#set: ec number=EC-3.1.3.5}}
 +
{{#set: gene associated=Tiso_gene_14435|Tiso_gene_6640|Tiso_gene_14434|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14246|Tiso_gene_6988}}
 +
{{#set: in pathway=PWY-5695|PWY-6596}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:38, 21 March 2018

Reaction XMPXAN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • ORF
    • 5_-nucleotidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=XMPXAN-RXN&oldid=42960"