Difference between revisions of "Tiso gene 19184"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
(Created page with "Category:Gene == Gene Tiso_gene_19184 == * right end position: ** 2270 * transcription direction: ** POSITIVE * left end position: ** 7 * centisome position: ** 0.27711797...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
+
== Gene Tiso_gene_19184 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 2270
−
* common name:
+
* transcription direction:
−
** 3-isopropylmalate dehydrogenase
+
** POSITIVE
 +
* left end position:
 +
** 7
 +
* centisome position:
 +
** 0.27711797   
 
* Synonym(s):
 
* Synonym(s):
−
** β-isopropylmalic enzyme
 
−
** threo-Ds-3-isopropylmalate dehydrogenase
 
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-12086]]
−
** 1 [[NAD]][c] '''+''' 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-7100]][c] '''+''' 1 [[PROTON]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 NAD+[c] '''+''' 1 (2R,3S)-3-isopropylmalate[c] '''<=>''' 1 NADH[c] '''+''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''+''' 1 H+[c]
+
* Reaction: [[RXN-12579]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
−
* [[Tiso_gene_2920]]
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
== Pathways associated ==
−
** [[pantograph]]-[[athaliana]]
+
* [[LIPAS-PWY]]
−
** [[pantograph]]-[[synechocystis]]
+
* [[PWY-6857]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=2270}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=7}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
+
{{#set: centisome position=0.27711797    }}
−
* UNIPROT:
+
{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P05644 P05644]
+
{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
−
** [http://www.uniprot.org/uniprot/P05645 P05645]
+
−
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
+
−
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
+
−
** [http://www.uniprot.org/uniprot/P08791 P08791]
+
−
** [http://www.uniprot.org/uniprot/P30125 P30125]
+
−
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
+
−
** [http://www.uniprot.org/uniprot/O66607 O66607]
+
−
** [http://www.uniprot.org/uniprot/P12010 P12010]
+
−
** [http://www.uniprot.org/uniprot/P04173 P04173]
+
−
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
+
−
** [http://www.uniprot.org/uniprot/P24098 P24098]
+
−
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
+
−
** [http://www.uniprot.org/uniprot/P43860 P43860]
+
−
** [http://www.uniprot.org/uniprot/P41019 P41019]
+
−
** [http://www.uniprot.org/uniprot/P54354 P54354]
+
−
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
+
−
** [http://www.uniprot.org/uniprot/P29102 P29102]
+
−
** [http://www.uniprot.org/uniprot/P37412 P37412]
+
−
** [http://www.uniprot.org/uniprot/P23390 P23390]
+
−
** [http://www.uniprot.org/uniprot/P29696 P29696]
+
−
** [http://www.uniprot.org/uniprot/P41766 P41766]
+
−
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
+
−
** [http://www.uniprot.org/uniprot/P34733 P34733]
+
−
** [http://www.uniprot.org/uniprot/P50180 P50180]
+
−
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
+
−
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
+
−
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
+
−
** [http://www.uniprot.org/uniprot/P07139 P07139]
+
−
** [http://www.uniprot.org/uniprot/P41926 P41926]
+
−
** [http://www.uniprot.org/uniprot/P48012 P48012]
+
−
** [http://www.uniprot.org/uniprot/P87256 P87256]
+
−
** [http://www.uniprot.org/uniprot/P87257 P87257]
+
−
** [http://www.uniprot.org/uniprot/P73960 P73960]
+
−
** [http://www.uniprot.org/uniprot/O86504 O86504]
+
−
** [http://www.uniprot.org/uniprot/O85837 O85837]
+
−
** [http://www.uniprot.org/uniprot/P18869 P18869]
+
−
** [http://www.uniprot.org/uniprot/P34738 P34738]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=3-isopropylmalate dehydrogenase}}
+
−
{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
+
−
{{#set: gene associated=Tiso_gene_2920}}
+
−
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:39, 21 March 2018

Gene Tiso_gene_19184

  • right end position:
    • 2270
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7
  • centisome position:
    • 0.27711797
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19184&oldid=43000"