Difference between revisions of "PWY-5686"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_11231 == * left end position: ** 358 * transcription direction: ** POSITIVE * right end position: ** 2753 * centisome position: ** 4.508248...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Pathway]]
−
== Gene Tiso_gene_11231 ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686] ==
−
* left end position:
+
* taxonomic range:
−
** 358
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
−
* transcription direction:
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
−
** POSITIVE
+
* common name:
−
* right end position:
+
** UMP biosynthesis I
−
** 2753
+
−
* centisome position:
+
−
** 4.5082483   
+
 
* Synonym(s):
 
* Synonym(s):
 +
** uridine-5'-phosphate biosynthesis I
 +
** de novo biosynthesis of uridine-5'-phosphate I
 +
** de novo biosynthesis of uridine-5'-monophosphate I
  
−
== Reactions associated ==
+
== Reaction(s) found ==
−
* [[ACETYLORNTRANSAM-RXN]]
+
'''6''' reactions found over '''6''' reactions in the full pathway
−
** in-silico_annotation
+
* [[ASPCARBTRANS-RXN]]
−
***automated-name-match
+
** 1 associated gene(s):
−
** [[pantograph]]-[[synechocystis]]
+
*** [[Tiso_gene_13527]]
−
** [[pantograph]]-[[esiliculosus]]
+
** 7 reconstruction source(s) associated:
−
** [[pantograph]]-[[creinhardtii]]
+
*** [[annotation-experimental_annotation]]
−
* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
+
*** [[orthology-esiliculosus]]
−
** in-silico_annotation
+
*** [[annotation-in-silico_annotation]]
−
***ec-number
+
*** [[orthology-athaliana]]
−
** experimental_annotation
+
*** [[orthology-synechocystis]]
−
***ec-number
+
*** [[manual-primary_network]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[orthology-creinhardtii]]
−
* [[GABATRANSAM-RXN]]
+
* [[CARBPSYN-RXN]]
−
** [[pantograph]]-[[synechocystis]]
+
** 3 associated gene(s):
−
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
+
*** [[Tiso_gene_4976]]
−
** [[pantograph]]-[[synechocystis]]
+
*** [[Tiso_gene_4975]]
−
* [[RXN-15007]]
+
*** [[Tiso_gene_4685]]
−
** in-silico_annotation
+
** 4 reconstruction source(s) associated:
−
***automated-name-match
+
*** [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** [[manual-primary_network]]
−
== Pathways associated ==
+
*** [[annotation-experimental_annotation]]
−
* [[PWY-4321]]
+
*** [[orthology-esiliculosus]]
−
* [[GLUTORN-PWY]]
+
* [[DIHYDROOROT-RXN]]
−
* [[PWY-6922]]
+
** 1 associated gene(s):
−
* [[GLUDEG-I-PWY]]
+
*** [[Tiso_gene_15379]]
−
* [[PWY-6344]]
+
** 5 reconstruction source(s) associated:
−
* [[PWY-3341]]
+
*** [[annotation-in-silico_annotation]]
−
* [[P181-PWY]]
+
*** [[manual-primary_network]]
−
* [[GLYSYN-ALA-PWY]]
+
*** [[orthology-creinhardtii]]
−
* [[ARGASEDEG-PWY]]
+
*** [[orthology-synechocystis]]
−
* [[PWY-5022]]
+
*** [[annotation-experimental_annotation]]
−
* [[PWY-5154]]
+
* [[DIHYDROOROTATE-DEHYDROGENASE-RXN]]
−
* [[PWY-6536]]
+
** 2 associated gene(s):
−
* [[PWY-6535]]
+
*** [[Tiso_gene_4735]]
−
* [[ARGSYNBSUB-PWY]]
+
*** [[Tiso_gene_5280]]
−
* [[PWY-4981]]
+
** 2 reconstruction source(s) associated:
−
* [[PWY-7400]]
+
*** [[annotation-in-silico_annotation]]
−
* [[PWY-6537]]
+
*** [[orthology-esiliculosus]]
−
* [[ARG-PRO-PWY]]
+
* [[OROPRIBTRANS-RXN]]
−
* [[ARGININE-SYN4-PWY]]
+
** 3 associated gene(s):
−
* [[CITRULBIO-PWY]]
+
*** [[Tiso_gene_11163]]
 +
*** [[Tiso_gene_18647]]
 +
*** [[Tiso_gene_11164]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[manual-primary_network]]
 +
* [[OROTPDECARB-RXN]]
 +
** 2 associated gene(s):
 +
*** [[Tiso_gene_20050]]
 +
*** [[Tiso_gene_18647]]
 +
** 5 reconstruction source(s) associated:
 +
*** [[orthology-athaliana]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-synechocystis]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[manual-primary_network]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=358}}
+
* ECOCYC:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-5686 PWY-5686]
−
{{#set: right end position=2753}}
+
{{#set: taxonomic range=TAX-2759}}
−
{{#set: centisome position=4.5082483    }}
+
{{#set: taxonomic range=TAX-2}}
−
{{#set: reaction associated=ACETYLORNTRANSAM-RXN|ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN|GABATRANSAM-RXN|ORNITHINE-GLU-AMINOTRANSFERASE-RXN|RXN-15007}}
+
{{#set: common name=UMP biosynthesis I}}
−
{{#set: pathway associated=PWY-4321|GLUTORN-PWY|PWY-6922|GLUDEG-I-PWY|PWY-6344|PWY-3341|P181-PWY|GLYSYN-ALA-PWY|ARGASEDEG-PWY|PWY-5022|PWY-5154|PWY-6536|PWY-6535|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|PWY-6537|ARG-PRO-PWY|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
+
{{#set: common name=uridine-5'-phosphate biosynthesis I|de novo biosynthesis of uridine-5'-phosphate I|de novo biosynthesis of uridine-5'-monophosphate I}}
 +
{{#set: reaction found=6}}
 +
{{#set: total reaction=6}}
 +
{{#set: completion rate=100.0}}

Latest revision as of 19:39, 21 March 2018

Pathway PWY-5686

  • taxonomic range:
  • common name:
    • UMP biosynthesis I
  • Synonym(s):
    • uridine-5'-phosphate biosynthesis I
    • de novo biosynthesis of uridine-5'-phosphate I
    • de novo biosynthesis of uridine-5'-monophosphate I

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5686&oldid=43034"