Difference between revisions of "RXN-11856"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-METHYL-6-SOLANYL-14-BENZOQUINONE 2-METHYL-6-SOLANYL-14-BENZOQUINONE] == * smiles: ** CC(=CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11856 RXN-11856] == * direction: ** LEFT-TO-RIGHT * common name: ** tRNA (cytosine(34)-C(5))-me...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-METHYL-6-SOLANYL-14-BENZOQUINONE 2-METHYL-6-SOLANYL-14-BENZOQUINONE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11856 RXN-11856] ==
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* smiles:
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* direction:
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** CC(=CCCC(C)=CCCC(=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCC1(=C(O)C(C)=CC(O)=C1))C)C)C)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SWKACZQJGXABCN-JSGWLJPKSA-N
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* common name:
 
* common name:
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** 2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol
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** tRNA (cytosine(34)-C(5))-methyltransferase
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* molecular weight:
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* ec number:
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** 737.203  
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** [http://enzyme.expasy.org/EC/2.1.1.203 EC-2.1.1.203]
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** [http://enzyme.expasy.org/EC/2.1.1.202 EC-2.1.1.202]
 
* Synonym(s):
 
* Synonym(s):
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** MSBQ
 
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** 2-methyl-6-solanesyl-1,4-benzoquinol
 
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** 2-methyl-6--all-trans-nonaprenyl-benzene-1,4-diol
 
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** 2-methyl-6-solanyl-1,4-benzoquinol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-2762]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Cytosine-34-tRNA-Precursors]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-METHYLCYTOSINE-34-TRNA-PRECURSORS]][c]
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* [[R600]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 S-adenosyl-L-methionine[c] '''+''' 1 a cytosine34 in tRNA precursor[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 H+[c] '''+''' 1 a 5 methylcytosine34 in tRNA precursor[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_3065]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237185 44237185]
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{{#set: common name=tRNA (cytosine(34)-C(5))-methyltransferase}}
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* CHEBI:
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{{#set: ec number=EC-2.1.1.203}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=75402 75402]
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{{#set: ec number=EC-2.1.1.202}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_3065}}
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** [http://www.genome.jp/dbget-bin/www_bget?C17570 C17570]
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{{#set: in pathway=PWY-6829}}
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{{#set: smiles=CC(=CCCC(C)=CCCC(=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCC1(=C(O)C(C)=CC(O)=C1))C)C)C)C}}
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{{#set: reconstruction category=annotation}}
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{{#set: inchi key=InChIKey=SWKACZQJGXABCN-JSGWLJPKSA-N}}
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{{#set: reconstruction source=annotation-experimental_annotation}}
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{{#set: common name=2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: molecular weight=737.203    }}
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{{#set: common name=MSBQ|2-methyl-6-solanesyl-1,4-benzoquinol|2-methyl-6--all-trans-nonaprenyl-benzene-1,4-diol|2-methyl-6-solanyl-1,4-benzoquinol}}
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{{#set: consumed by=RXN-2762}}
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{{#set: produced by=R600}}
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Latest revision as of 19:40, 21 March 2018

Reaction RXN-11856

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • tRNA (cytosine(34)-C(5))-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6829, tRNA methylation (yeast): PWY-6829
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-11856&oldid=43134"