Difference between revisions of "PNKIN-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase * ec numbe...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNKIN-RXN PNKIN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4479 TAX-4479]
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* common name:
 
* common name:
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** C4 photosynthetic carbon assimilation cycle, PEPCK type
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** pyridoxal_kinase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
 
* Synonym(s):
 
* Synonym(s):
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** C4 photosynthesis, PEPCK type
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''7''' reactions found over '''10''' reactions in the full pathway
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* With identifiers:
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* [[ALANINE-AMINOTRANSFERASE-RXN]]
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** 1 [[PYRIDOXINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXINE-5P]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_5959]]
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** 1 pyridoxine[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 pyridoxine 5'-phosphate[c]
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*** [[Tiso_gene_10957]]
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** 5 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_6106]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-athaliana]]
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* [[ASPAMINOTRANS-RXN]]
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** Source: [[orthology-esiliculosus]]
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** 6 associated gene(s):
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_6815]]
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== Pathways  ==
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*** [[Tiso_gene_13538]]
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* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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*** [[Tiso_gene_15680]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_17718]]
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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*** [[Tiso_gene_17809]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_12889]]
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* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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** 7 reconstruction source(s) associated:
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** Tool: [[pantograph]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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* [[MALIC-NADP-RXN]]
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*** Tool: [[pantograph]]
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** 3 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_6675]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_12896]]
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_12200]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPCARBOXYKIN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19475]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[RXN-13697]]
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** 6 associated gene(s):
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*** [[Tiso_gene_13538]]
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*** [[Tiso_gene_17809]]
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*** [[Tiso_gene_12889]]
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*** [[Tiso_gene_6815]]
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*** [[Tiso_gene_15680]]
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*** [[Tiso_gene_17718]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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−
*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-13698]]
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** 2 associated gene(s):
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*** [[Tiso_gene_10957]]
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*** [[Tiso_gene_5959]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN0-5224]]
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** 10 associated gene(s):
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*** [[Tiso_gene_18927]]
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*** [[Tiso_gene_19414]]
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*** [[Tiso_gene_6150]]
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*** [[Tiso_gene_7660]]
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*** [[Tiso_gene_1600]]
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*** [[Tiso_gene_3056]]
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*** [[Tiso_gene_9852]]
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*** [[Tiso_gene_17511]]
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*** [[Tiso_gene_19413]]
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*** [[Tiso_gene_20230]]
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** 4 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=MALATE-DEHYDROGENASE-NADP+-RXN MALATE-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-3398}}
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* RHEA:
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{{#set: taxonomic range=TAX-4479}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25108 25108]
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{{#set: common name=C4 photosynthetic carbon assimilation cycle, PEPCK type}}
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* LIGAND-RXN:
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{{#set: common name=C4 photosynthesis, PEPCK type}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
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{{#set: reaction found=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=10}}
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{{#set: common name=pyridoxal_kinase}}
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{{#set: completion rate=70.0}}
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{{#set: ec number=EC-2.7.1.35}}
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{{#set: gene associated=Tiso_gene_6106}}
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{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:41, 21 March 2018

Reaction PNKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyridoxal_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxine[c] + 1 ATP[c] => 1 ADP[c] + 1 H+[c] + 1 pyridoxine 5'-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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