Difference between revisions of "GPH-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_2949 == * left end position: ** 14009 * transcription direction: ** POSITIVE * right end position: ** 15847 * centisome position: ** 78.088...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoglycolate_phosphatase_2...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_2949 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPH-RXN GPH-RXN] ==
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* left end position:
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* direction:
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** 14009
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** phosphoglycolate_phosphatase_2
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* right end position:
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** phosphoglycolate_phosphatase
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** 15847
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** solute_carrier_family_38
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* centisome position:
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* ec number:
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** 78.088066   
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** [http://enzyme.expasy.org/EC/3.1.3.18 EC-3.1.3.18]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[NADH-DEHYDROG-A-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CPD-67]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCOLLATE]][c] '''+''' 1 [[Pi]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 2-phosphoglycolate[c] '''+''' 1 H2O[c] '''=>''' 1 glycolate[c] '''+''' 1 phosphate[c]
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-4302]]
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* Gene: [[Tiso_gene_18052]]
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* [[PWY-3781]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6692]]
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*** Assignment: EC-NUMBER
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* [[PWY0-1334]]
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* Gene: [[Tiso_gene_18053]]
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* [[PWY0-1335]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5083]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18054]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_15498]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8723]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways ==
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* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=14009}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14369 14369]
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{{#set: right end position=15847}}
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* LIGAND-RXN:
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{{#set: centisome position=78.088066    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01334 R01334]
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{{#set: reaction associated=NADH-DEHYDROG-A-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-4302|PWY-3781|PWY-6692|PWY0-1334|PWY0-1335|PWY-5083}}
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** [http://www.uniprot.org/uniprot/P40852 P40852]
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** [http://www.uniprot.org/uniprot/P40853 P40853]
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** [http://www.uniprot.org/uniprot/P32662 P32662]
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** [http://www.uniprot.org/uniprot/P73525 P73525]
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** [http://www.uniprot.org/uniprot/O33512 O33512]
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** [http://www.uniprot.org/uniprot/Q9S586 Q9S586]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoglycolate_phosphatase_2}}
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{{#set: common name=phosphoglycolate_phosphatase}}
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{{#set: common name=solute_carrier_family_38}}
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{{#set: ec number=EC-3.1.3.18}}
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{{#set: gene associated=Tiso_gene_18052|Tiso_gene_18053|Tiso_gene_18054|Tiso_gene_15498|Tiso_gene_8723}}
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{{#set: in pathway=PWY-181}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:41, 21 March 2018

Reaction GPH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoglycolate_phosphatase_2
    • phosphoglycolate_phosphatase
    • solute_carrier_family_38
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 2-phosphoglycolate[c] + 1 H2O[c] => 1 glycolate[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-181, photorespiration: PWY-181
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GPH-RXN&oldid=43220"