Difference between revisions of "UROGENDECARBOX-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?ob...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** uroporphy...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENDECARBOX-RXN UROGENDECARBOX-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200918 TAX-200918]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200940 TAX-200940]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-544448 TAX-544448]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-508458 TAX-508458]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-203691 TAX-203691]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40117 TAX-40117]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-142182 TAX-142182]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-32066 TAX-32066]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1783270 TAX-1783270]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-74152 TAX-74152]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-68297 TAX-68297]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1297 TAX-1297]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200930 TAX-200930]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200938 TAX-200938]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200795 TAX-200795]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1783257 TAX-1783257]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-67814 TAX-67814]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-68336 TAX-68336]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
+
 
* common name:
 
* common name:
−
** superpathway of (Kdo)2-lipid A biosynthesis
+
** uroporphyrinogen_decarboxylase
 +
** uroporphyrinogen_chloroplast
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.37 EC-4.1.1.37]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''10''' reactions in the full pathway
+
* With identifiers:
−
* [[KDOSYN-PWY]]
+
** 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
−
** 0 associated gene:
+
* With common name(s):
−
* [[MYRISTOYLACYLTRAN-RXN]]
+
** 4 H+[c] '''+''' 1 uroporphyrinogen-III[c] '''=>''' 4 CO2[c] '''+''' 1 coproporphyrinogen III[c]
−
** 2 associated gene(s):
+
 
−
*** [[Tiso_gene_5065]]
+
== Genes associated with this reaction  ==
−
*** [[Tiso_gene_14060]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Tiso_gene_18743]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[NAGLIPASYN-PWY]]
+
*** Assignment: EC-NUMBER
−
** 0 associated gene:
+
** Source: [[annotation-experimental_annotation]]
−
* [[PWY-1269]]
+
*** Assignment: EC-NUMBER
−
** 0 associated gene:
+
** Source: [[orthology-esiliculosus]]
−
== Reaction(s) not found ==
+
* Gene: [[Tiso_gene_19684]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=LAUROYLACYLTRAN-RXN LAUROYLACYLTRAN-RXN]
+
** Source: [[annotation-in-silico_annotation]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=MYRPALMTRAN-RXN MYRPALMTRAN-RXN]
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=PALMITOTRANS-RXN PALMITOTRANS-RXN]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18744]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5173]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[HEMESYN2-PWY]], heme biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7766]], heme biosynthesis IV (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7766 PWY-7766]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
* RHEA:
−
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19865 19865]
−
{{#set: taxonomic range=TAX-200918}}
+
* LIGAND-RXN:
−
{{#set: taxonomic range=TAX-200940}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
−
{{#set: taxonomic range=TAX-544448}}
+
* UNIPROT:
−
{{#set: taxonomic range=TAX-508458}}
+
** [http://www.uniprot.org/uniprot/P06132 P06132]
−
{{#set: taxonomic range=TAX-203691}}
+
** [http://www.uniprot.org/uniprot/P16891 P16891]
−
{{#set: taxonomic range=TAX-1224}}
+
** [http://www.uniprot.org/uniprot/P32395 P32395]
−
{{#set: taxonomic range=TAX-40117}}
+
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
−
{{#set: taxonomic range=TAX-142182}}
+
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
−
{{#set: taxonomic range=TAX-32066}}
+
** [http://www.uniprot.org/uniprot/P29680 P29680]
−
{{#set: taxonomic range=TAX-1783270}}
+
** [http://www.uniprot.org/uniprot/P32347 P32347]
−
{{#set: taxonomic range=TAX-74152}}
+
** [http://www.uniprot.org/uniprot/P32920 P32920]
−
{{#set: taxonomic range=TAX-68297}}
+
** [http://www.uniprot.org/uniprot/P54224 P54224]
−
{{#set: taxonomic range=TAX-1297}}
+
** [http://www.uniprot.org/uniprot/O81220 O81220]
−
{{#set: taxonomic range=TAX-200930}}
+
** [http://www.uniprot.org/uniprot/P70697 P70697]
−
{{#set: taxonomic range=TAX-1117}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: taxonomic range=TAX-200938}}
+
{{#set: common name=uroporphyrinogen_decarboxylase}}
−
{{#set: taxonomic range=TAX-200795}}
+
{{#set: common name=uroporphyrinogen_chloroplast}}
−
{{#set: taxonomic range=TAX-1783257}}
+
{{#set: ec number=EC-4.1.1.37}}
−
{{#set: taxonomic range=TAX-67814}}
+
{{#set: gene associated=Tiso_gene_18743|Tiso_gene_19684|Tiso_gene_18744|Tiso_gene_5173}}
−
{{#set: taxonomic range=TAX-68336}}
+
{{#set: in pathway=HEMESYN2-PWY|PWY0-1415|PWY-7159|PWY-5531|CHLOROPHYLL-SYN|PWY-7766|HEME-BIOSYNTHESIS-II}}
−
{{#set: taxonomic range=TAX-200783}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=superpathway of (Kdo)2-lipid A biosynthesis}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: reaction found=4}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: total reaction=10}}
+
−
{{#set: completion rate=40.0}}
+

Latest revision as of 19:41, 21 March 2018

Reaction UROGENDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • uroporphyrinogen_decarboxylase
    • uroporphyrinogen_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • HEMESYN2-PWY, heme biosynthesis II (anaerobic): HEMESYN2-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 4 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7766, heme biosynthesis IV (Gram-positive bacteria): PWY-7766
    • 1 reactions found over 4 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UROGENDECARBOX-RXN&oldid=43243"