Difference between revisions of "RXN-16095"

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(Created page with "Category:Gene == Gene Tiso_gene_16284 == * left end position: ** 1908 * transcription direction: ** NEGATIVE * right end position: ** 4251 * centisome position: ** 42.6750...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16095 RXN-16095] == * direction: ** LEFT-TO-RIGHT * common name: ** chloroplast_beta-keto_acyl_...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16284 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16095 RXN-16095] ==
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* left end position:
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* direction:
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** 1908
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** chloroplast_beta-keto_acyl_reductase
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* right end position:
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* ec number:
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** 4251
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** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
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* centisome position:
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** 42.675014   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[FARNESYLTRANSTRANSFERASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-17346]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-17347]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 3-oxo-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] '''=>''' 1 NADP+[c] '''+''' 1 (3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c]
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***ec-number
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_9871]]
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* [[FPPSYN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[GGPS]]
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== Pathways ==
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
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* [[GPPS]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7725 PWY-7725]
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* [[GPPSYN-RXN]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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** [[pantograph]]-[[athaliana]]
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* [[PWY-6598]], sciadonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6598 PWY-6598]
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** [[pantograph]]-[[synechocystis]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** [[pantograph]]-[[esiliculosus]]
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== Reconstruction information  ==
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** [[pantograph]]-[[creinhardtii]]
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* Category: [[annotation]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-7736]]
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*** Tool: [[pathwaytools]]
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* [[PWY-7492]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-6659]]
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*** Tool: [[pathwaytools]]
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* [[PWY-6383]]
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* [[PWY-6691]]
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* [[PWY-6859]]
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* [[PWY-7709]]
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* [[PWY-7102]]
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* [[PWY-7182]]
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* [[PWY-5120]]
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* [[PWY-5123]]
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* [[PWY-5122]]
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* [[PWY-7141]]
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* [[PWY-7517]]
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* [[PWY-7721]]
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* [[PWY-7720]]
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* [[PWY-7410]]
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* [[PWY-7659]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=1908}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=chloroplast_beta-keto_acyl_reductase}}
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{{#set: right end position=4251}}
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{{#set: ec number=EC-1.1.1.330}}
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{{#set: centisome position=42.675014    }}
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{{#set: gene associated=Tiso_gene_9871}}
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{{#set: reaction associated=FARNESYLTRANSTRANSFERASE-RXN|FPPSYN-RXN|GGPS|GPPS|GPPSYN-RXN}}
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{{#set: in pathway=PWY-7601|PWY-7725|PWY-6598}}
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{{#set: pathway associated=PWY-7736|PWY-7492|PWY-6659|PWY-6383|PWY-6691|PWY-6859|PWY-7709|PWY-7102|PWY-7182|PWY-5120|PWY-5123|PWY-5122|PWY-7141|PWY-7517|PWY-7721|PWY-7720|PWY-7410|PWY-7659}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:41, 21 March 2018

Reaction RXN-16095

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • chloroplast_beta-keto_acyl_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADPH[c] + 1 H+[c] + 1 3-oxo-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] => 1 NADP+[c] + 1 (3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): PWY-7601
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7725, arachidonate biosynthesis V (8-detaturase, mammals): PWY-7725
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6598, sciadonate biosynthesis: PWY-6598
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-16095&oldid=43262"